| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2237 |
|---|
| Symbol | |
|---|
| ID | 4022722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2500149 |
|---|
| End bp | 2500895 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637962432 |
|---|
| Product | putative proteasome-type protease |
|---|
| Protein accession | YP_569373 |
|---|
| Protein GI | 91976714 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3484] Predicted proteasome-type protease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.345508 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTATT GCTGCGGAGT TTTGGTCCAG GACGGCCTGG TGATGGTGGC CGACACCAGG
ACCAATGCCG GGCTCGACAA CATCTCGACC TTCCGCAAGC TGCACGTCTT CAGCCGGCCG
GGCGACCGGG TCATGGCGAT CGCCAGCGCC GGCAATCTCT CGATCAGCCA GTCGGTGCTG
TCGACGCTGA CCGAAGGCCT CGAGGATCCG GAGACCGGCG CCCGTGAAAC GCTGCTCGAC
TCGCCGACGA TGTTTCAGGC GGCGCAGCGC ATCGGCCGCG TGATCCGCCA CGTCAACGCC
ACCGAGGCGC AGGCGCTGAA GGCCGAGGAG ATCAACTACG AGGTGTCGTT CCTGTTCGGC
GGCCAGATCA AGGGCGAGCG GATGCGCCTG TTCATGATCT ACCCGGCCGG CAATTTCATC
GAATGCACCA TCGACACGCC GTATCTGCAG ATCGGCGAGC ACAAATACGG CAAGCCGGTG
CTCGACCGTG CGATTACTTA CGACGTCGAA TTGTACGAGG CGCTGAAGAC CAGCCTGATC
TCGATGGATT CGACGATGCG CTCGAATCTC GGCGTCGGGC TGCCGATCGA CGTACTCGTC
GTCCGCACCG ACGTCTGCGA CCCCGATCTC CACCATCGTA TCGAGGCCGG CGAGCCGTAT
TTCCACGACC TGCGCTCGCG CTGGTCCGCC GCGCTTCGCG CCGCCCACAA GAACATCCCA
AAACCGCCGT ACAAAAATCA GGCCTGA
|
|---|
| Protein sequence | MTYCCGVLVQ DGLVMVADTR TNAGLDNIST FRKLHVFSRP GDRVMAIASA GNLSISQSVL
STLTEGLEDP ETGARETLLD SPTMFQAAQR IGRVIRHVNA TEAQALKAEE INYEVSFLFG
GQIKGERMRL FMIYPAGNFI ECTIDTPYLQ IGEHKYGKPV LDRAITYDVE LYEALKTSLI
SMDSTMRSNL GVGLPIDVLV VRTDVCDPDL HHRIEAGEPY FHDLRSRWSA ALRAAHKNIP
KPPYKNQA
|
|---|
| |