Gene RPD_2209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_2209 
Symbol 
ID4022694 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2472057 
End bp2473319 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content64% 
IMG OID637962404 
Productbeta-lactamase 
Protein accessionYP_569345 
Protein GI91976686 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.683727 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.729907 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGCCC AAGCCCAGAA GCCTCGATCC CCCGCAACCG GCTCGGCCGC TAGCGCTGGC 
ATGTCCGAGA CGGCGCTGAA GCGGATCGAC GATCACCTGA AGCGGGTCTA CGTCGATCCC
GGCAGGTTCG CCGGCGCCCA GACGCTGGTC TATCGCCGCG GCCAGATCGT TTATCAATCG
TCGCTGGGCT ACGCCGACCG TGAGCGCAAA GCGCCGATCA AGGACGACAC CATCTTCCGG
ATCTATTCGA TGACCAAGCC GATCACCTCG GTCGCGCTGA TGATGCTGTT CGAGGAAGGT
CGCATCCAGC TCGACGATCC GGTCGCGAAA TACATTCCGG AATGGGCCAA TCTCGGCGTA
TTTCAGGCCG GCATCGCGCC TGCGTTTCTG ACCAGACCGC CGGCGCGGCC GATGCAGATC
GTCGATCTGT TGCGGCATAC GTCGGGCCTC ACCTACGGCT TCCAGAACCG CACCAATGTC
GACGCCGCCT ATCGCGACAA GGGGATCGGC GCGTTCGAAA AGGCCGGCAC GCTGGACTGC
TGGATCGCCG ATCTCGCGAA GATTCCGCTG GAGTTCTCAC CGGGCGAGGC TTGGAACTAC
TCGGTGTCGA CCGACGTGCT CGGCTACATC ATTCAGAAGA TCAGCGGCAT GCCGTTCGAG
CAATTCGTCA GGCAGCGAAT TCTCGATCCG CTCGGCATGA CCGACACCGA CTTCTTCGTC
CCCGAAGCGA AAGCGCACCG CCTCGCCGCC TGCTACTCCG CCGATGGCGA GGGCGGCATG
ACGTTGCAGG ATGATCCAGC CACCAGCAGC TTCCTGGCGC CGCCCGATCT GATCTCCGGC
GGCGGCGGGC TGGTCTCGAC CACGGCGGAC TATCTTGCAT TCTGCCGCGC GCTGCTCAAT
GGCGGCGAAC TCGGCGGCGT CCGCCTGATC GGCCCGAAGA CCCTCAGGCT GATGACCACC
AACCACCTCC CCGGCAATCG CGACCTCACC GAGATGTCGC GCTCGATGTT CAGCGAAGCA
ACCAATGCCG GCATCGGCTT CGGCCTCGGC TTCGCCGTCA ACATGAACCC GGCCTCGACG
CTGCTTCCCG GCAGTGTCGG CGAGTATTAT TGGGGCGGCG CCGCCTCGAC CGCGTTCTGG
ATCGATCCGG CCGAGGACCT GATCACCATC TTCATGACCC AGCTTCTGCC GTCGAGCAGC
TATCCGATCC GCCGCGAGCT GCGCGCGCTG GTCTATGGCG CGATCACCGA GAGCAATCTC
TAA
 
Protein sequence
MQAQAQKPRS PATGSAASAG MSETALKRID DHLKRVYVDP GRFAGAQTLV YRRGQIVYQS 
SLGYADRERK APIKDDTIFR IYSMTKPITS VALMMLFEEG RIQLDDPVAK YIPEWANLGV
FQAGIAPAFL TRPPARPMQI VDLLRHTSGL TYGFQNRTNV DAAYRDKGIG AFEKAGTLDC
WIADLAKIPL EFSPGEAWNY SVSTDVLGYI IQKISGMPFE QFVRQRILDP LGMTDTDFFV
PEAKAHRLAA CYSADGEGGM TLQDDPATSS FLAPPDLISG GGGLVSTTAD YLAFCRALLN
GGELGGVRLI GPKTLRLMTT NHLPGNRDLT EMSRSMFSEA TNAGIGFGLG FAVNMNPAST
LLPGSVGEYY WGGAASTAFW IDPAEDLITI FMTQLLPSSS YPIRRELRAL VYGAITESNL