| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2161 |
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| Symbol | |
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| ID | 4022644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2415919 |
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| End bp | 2416860 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637962355 |
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| Product | ATP dependent DNA ligase |
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| Protein accession | YP_569297 |
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| Protein GI | 91976638 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.379865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.199532 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCGAAGC GTGCGCGTGT TGTCCGAATA CATGCAGAGG GGGCCGTACC TGCCCCGATG
CCTGGATTTG TCCAGCCCCA GCTTGCCACC CTGCGGACAC GTCCACCGTC CGGTGCCGGA
TGGATCCACG AGATCAAGTT GGACGGATAC CGCGGCCAGG CGCACGTCGG CCCACAGGGG
ACCCGCATTT ACACCCGCGG AGGTCATGAC TGGTCGAAGA TGTTCGCCCC GCTGGTCGCC
GCCCTGTCGG ATGCCGCCGT CGACGAGGCG GTGATCGACG GCGAGATCGT GGTGGTCGTT
GATGAGCGGA CGGATTTCGG AGCCCTGCAG GCCGACCTTG CGGCAAGACG TGCCGACCGC
ATGCTGTTCT ACGCATTCGA CCTGCTGCAC CTCGACGGCT ACGACCTCGG GCCGGTCCCC
CTGACCGAGC GCAAGCGGCT TCTCAAGGGC CTCTTCGACC GTGGCCTGGA GCCACCGGTC
GTCTACAGCG ACAGCATGGA CGACGGCGAA GCAATGTTTG ATGGGGCTGG GCGCCTCGGG
TGGGAAGGCA TCGTCAGCAA GCGCGCCGAC GCGCCCTATC GCAGCGGCGA CCGGAGCTTG
GACTGGCAGA AGATCAAGAC CTCAAAGCGC GAGCATCTCG TCATCGTCGG CTACGTGCCG
GCGACAGGCG GCATCGCCGC GCTGCACGTC GCCAGGCGCG ACGGCGACAG CTTGGTCTAC
GCAGGAAAAG TCGGCACCGG GTTCTCGGTC AAGGTAGGCG CGGATCTGCG CCGGCGACTG
GCGGAGATCG AGACAGCAGC ACCGCCAATC GCCAAGCCGC CACCACGGCA CCGGCCGCGG
TGGGTCCGGC CGGTGATGAG CGCCGATGTC GAATACCGCG ACATCACCGC CAGCGGTCAT
CTGCGCCACG CATCTTTCAA GGGGCTCGCG AAGGCTCCGT AA
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| Protein sequence | MAKRARVVRI HAEGAVPAPM PGFVQPQLAT LRTRPPSGAG WIHEIKLDGY RGQAHVGPQG
TRIYTRGGHD WSKMFAPLVA ALSDAAVDEA VIDGEIVVVV DERTDFGALQ ADLAARRADR
MLFYAFDLLH LDGYDLGPVP LTERKRLLKG LFDRGLEPPV VYSDSMDDGE AMFDGAGRLG
WEGIVSKRAD APYRSGDRSL DWQKIKTSKR EHLVIVGYVP ATGGIAALHV ARRDGDSLVY
AGKVGTGFSV KVGADLRRRL AEIETAAPPI AKPPPRHRPR WVRPVMSADV EYRDITASGH
LRHASFKGLA KAP
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