| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2143 |
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| Symbol | |
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| ID | 4022626 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2401831 |
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| End bp | 2402817 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637962337 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_569279 |
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| Protein GI | 91976620 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.139753 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGA TCACTCTTTC GCTTCTGACC GCCGCAGCGG TCTTGGTTTC CGGCTTGGCG
GTCTATTGGT ATGTTCCATT TAATTCCAGT GATCCAATCT CCCAATCTGC GAAAGACTCT
AAGCCTGAAA AGGGCGGTGG CGAAAAAGCT GGCGGGGCCC ACGAGGAAGA GGGCGCTGTC
GAGATGAGTG ACGCTAGGGT CGCTTCCTCG GGCATAGAGA TAGCTGTTGC GGGCCCGGCG
ACCTTGCACG ATTCACTGAT CCTAAATGGC ATTCTGCAGC CGAATCAGGA GACGCTCGTT
CAGGTGACAC CTCGTTTTCC GGGCATTGTC CGGGAGATCC GGCGACGCAT TGGTGACAAG
GTGGAGAGCG GAGATCTCCT CGCCAAGATA GAGAGTAACC AGAGTCTCAC CGTATATGAA
ATGCGAGCGC CGATCCCCGG CACTGTGATC GACCGCCAGA TATCGCTCGG AGAGTACGCT
TCCGAGCAGA AACCGGCTTT CACCGTCGCC GACGTTTCGA CAGTTTGGGT TGATCTTTCG
GTCTATCGTC GGGACCTCCC GCGGGTTCGC ATCGGCGACA AGATCCTGAT CGATGTTGGT
GACGACGGTA AGCCAGTCGA GGCGAGCCTT TCTTACATAT CGCCTGTCGG TAGCAGCGAT
ACCCAGAGCG CTCTTGCCCG AGCAGTTGTT CCAAACGCGG ACATGCGCCT ACGCACCGGA
TTGTTCGTCT CCGCTCGACT GATCTTGGCC GCCCGCCAGG TACCGTTGGC GGTCAGGACG
TCGGCCGTCC AGACCATCGA GAACCGCAAT GTCGTGTTCG TTCGGAAAGG CGACAAGTTC
GAGGTCCGCG ACGTCGAACT CGGCGCGCGT GATACCGAAA ACGTGGAGGT TGCGTTCGGG
CTCATCGAGG GTGATCGCTA CGCGGCCAAG AACAGCTTCA TCGTAAAGGC GGAAATCGGC
AAGGGGTCAG CTTCCCATGA GCATTGA
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| Protein sequence | MKKITLSLLT AAAVLVSGLA VYWYVPFNSS DPISQSAKDS KPEKGGGEKA GGAHEEEGAV
EMSDARVASS GIEIAVAGPA TLHDSLILNG ILQPNQETLV QVTPRFPGIV REIRRRIGDK
VESGDLLAKI ESNQSLTVYE MRAPIPGTVI DRQISLGEYA SEQKPAFTVA DVSTVWVDLS
VYRRDLPRVR IGDKILIDVG DDGKPVEASL SYISPVGSSD TQSALARAVV PNADMRLRTG
LFVSARLILA ARQVPLAVRT SAVQTIENRN VVFVRKGDKF EVRDVELGAR DTENVEVAFG
LIEGDRYAAK NSFIVKAEIG KGSASHEH
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