| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2115 |
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| Symbol | |
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| ID | 4022597 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2367058 |
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| End bp | 2368383 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637962308 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_569251 |
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| Protein GI | 91976592 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0288069 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACGG CGATCATCTT CGGGCTTCTG ATCGCCCTGA TGTTGACCGG GATGCCGATC
TCGATCGCGC TCGGTCTGAC GGTGCTGTCA TTCGTCTTCC TGATGACCAA TGTGCCGATC
GAGGCGGTGT CGCTGAAATT GTTCACCGGC ATCGAGAATT TCGAGATCAT GGCGATCCCG
TTCTTCATCC TGGCCGGCAA TTTCCTGACC CATGGCGGCG TCGCCCGCCG CATGATCAAT
TTCGCCACCT CGATGGTCGG CCACTGGCAC GGCGGCCTCG GGCTCGCCGG CGTGATGGCC
TGCGCGCTGT TTGCCGCGGT GTCGGGCTCG TCGCCGGCCA CGGTGATTGC GATCGGCTCG
ATCATGCTGC CGGCGATGGT GAAGCAGGGC TTTCCGAAGC GGTTCGGCGC CGGCGTCATC
ACCACGTCGG GCGCGCTCGG CATTCTGATC CCGCCATCGA TCGTCATGGT GGTCTATGCG
GTCGCCACCG GCGGCTCGAT CGCGCTCGAT CCGGCCGGCA ATCGCGTGTC GTCGGCCTCG
GTCGGGCAGT TGTTCATGGC CGGCGTGATC CCCGGCTTGA TGCTGGCTTC GCTGCTTGGC
CTCACCACCT TCTACCGCGC CTGGAAGCAT AATTATCCGC GGCTGCCGAA GGCGAACTGG
GCGGAGCGGT TCGACGCATT CCGCAAGTGC GTTTGGGGCC TGCTGCTGAT CGTGATCGTG
CTCGGCGGCA TCTATGCCGG CCTGTTCACC CCGACCGAGG CCGCGGCGAT CAGCGCGGTC
TATGCCTTCG TGATCGCGGT GTTCGTCTAT CGCGACATGG GCCTGCGCGA CGTGCCACGG
GTGCTGCTCG GCTCCGCCAA TATGAGCGCG ATGATCCTCT ACATCATCAC CAACGCGGTG
CTGTTCTCGT TCCTGATGGC CAACGAAAAC ATTCCACAGC AGATCGCCAA CTGGATGTCG
ACCGCTGGCG TCAATTGGGT GGTGTTCCTG CTGGTGGTGA ACGTCCTGCT GCTGCTCGCC
GGCAATGTGA TGGAAGCCAC TTCGATCGTG CTGATCATGG CGCCGATCCT GTTTCCGGTG
GCGGTGCAAC TCGGCATCCA TCCGGTGCAT CTCGGCATCC TGATGGTGGT GAACATGGAA
GTGGGCATGT GCCACCCGCC AGTGGGGCTC AATCTGTACG TCGCCTCAGG CATCGCCAAG
ATGGGGATCA CCGAGCTGAC CGTCGCGGTG ATGCCGTGGC TGCTGACCAT GATCGCGTTC
CTCGGCGTCG TCACCTATGT GCCGGAAATC TCGCTGTGGT TGCCGCGTAT GCTTGGGATG
TTGTAG
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| Protein sequence | MNTAIIFGLL IALMLTGMPI SIALGLTVLS FVFLMTNVPI EAVSLKLFTG IENFEIMAIP
FFILAGNFLT HGGVARRMIN FATSMVGHWH GGLGLAGVMA CALFAAVSGS SPATVIAIGS
IMLPAMVKQG FPKRFGAGVI TTSGALGILI PPSIVMVVYA VATGGSIALD PAGNRVSSAS
VGQLFMAGVI PGLMLASLLG LTTFYRAWKH NYPRLPKANW AERFDAFRKC VWGLLLIVIV
LGGIYAGLFT PTEAAAISAV YAFVIAVFVY RDMGLRDVPR VLLGSANMSA MILYIITNAV
LFSFLMANEN IPQQIANWMS TAGVNWVVFL LVVNVLLLLA GNVMEATSIV LIMAPILFPV
AVQLGIHPVH LGILMVVNME VGMCHPPVGL NLYVASGIAK MGITELTVAV MPWLLTMIAF
LGVVTYVPEI SLWLPRMLGM L
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