| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2104 |
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| Symbol | |
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| ID | 4022586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2354768 |
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| End bp | 2356327 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637962297 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_569240 |
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| Protein GI | 91976581 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component
[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.882961 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.496916 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGTCT TCAGCGACCC ACGCTGGACC GAGGCGCTGG CCAATCTGCC GGACTATCTC
GGCAGCCATG TCCGCGTCAG CGTCGCGGCG CTGGGGCTCG GCCTCGCCGT CAGCCTGCCG
CTCGCGATCC TCGCGCGTCA CCGGCCGGTG CTGCGCGGCG CCCTGCTCGG CTTCGCCGGC
ATCGTGCAGA CCATTCCGGG CCTCGCATTG CTGGCGTTGT TCTATCCTCT GCTGCTGGCA
CTGGCGGCAC TGAGCGCGAG CACGCTCGGC GTCAGCTTCT CCGCGTTCGG CTTCCTGCCC
GCGGTGCTGG CGCTGGCGCT GTATTCGATG CTGCCGGTGC TGCGCAACAC CATCACCGGG
CTCGCCGGCG TCGACCCGGC GCTGATCGAG GCCGCACAGG GCGTCGGTAT GACTCCACGG
CAGACGCTGA CGATGGTCGA GCTGCCACTG GCGCTGCCGG TGATCATGGC CGGCATCCGC
ACCAGTGCGG TGTGGGTGAT CGGCACCGCG ACGCTGTCGA CGCCGATCGG TCAGACCAGC
CTCGGCAACT ACATCTTTGC GGGACTGCAA ACCCAGAACT GGGTGCTGGT GCTGTTCGGC
TGTGCCGCAG CCGCTGTGCT GGCGCTGGCG GTCGATCAAT TGTTGGCGCT GATCGAGACT
GGCCTGCGGC TCCGCAGCCG GCTCCGCGTC GCGCTCGGCG GCCTCGGGCT CGCCGCGCTG
GTGATCGCGA CGCTGGCGCC GTCGCTCGCG TCGTCGAAAT CGACCTATGT GGTCGGCGCC
AAGACCTTCA CCGAGCAATA CGTCTTGGCG GCGCTGATTG CGCAGCAACT CGACGACCGA
GGTCTTCCCG CCACGATCCG CGCCGGCCTC GGCTCCAGCG TAATCTACGA CGCGCTCAAA
AGCGGCGATA TCGATGCTTA CGTCGATTAT TCCGGCACGC TGTGGGCCAA CCAGTTTCAC
CACCCCGGCA TCGCCGCGCG GGACCAAGTC TTGAGCGATC TGAAAGGCGA CCTCGGCAGA
GACGGCGTCA CGCTGCTCGG CGAACTCGGC TTCGCGAACG CCTATGCGCT GGTGATGCCG
CGCGCCAGAG CGGAGGCGCT CGGCGTCCGG TCGATCGCTG ATCTCGCTGC GCGCGCGCCG
CAGATGACGA TCGCTGGCGA CTATGAATTC TTCTCGCGCC CGGAATGGGC CGAGCTGCGC
AGGACTTACG GGCTTTCGTT CAAGACCGAG CGGCAGATGC AGCCGGACTT CATGTATGCC
GCCGTCGCCT CCGGCGAGGT CGATCTGATC GCGGGCTACA CCTCGGACGG GCTGATCGCG
AAATACGATC TGGTCGTCCT CGACGATCCG CGACAGGCGA TTCCGCCTTA CGACGCCGTG
CTGCTGGTGT CGCCGAAGCG CGCCGGTGAC ACGAAGCTGC GCGACGCGCT CAGCCCCCTC
GTCGGCCGTA TCGACATCGC GGCGATGCGA GCGGCCAATC TCCGGGCCGC TTCCGGCGGC
GGCACAGGCA CGCCGGATGT GGTGGCGCGT GCGCTGTGGG ACAGCGTGAA GCCGCGGTGA
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| Protein sequence | MSVFSDPRWT EALANLPDYL GSHVRVSVAA LGLGLAVSLP LAILARHRPV LRGALLGFAG
IVQTIPGLAL LALFYPLLLA LAALSASTLG VSFSAFGFLP AVLALALYSM LPVLRNTITG
LAGVDPALIE AAQGVGMTPR QTLTMVELPL ALPVIMAGIR TSAVWVIGTA TLSTPIGQTS
LGNYIFAGLQ TQNWVLVLFG CAAAAVLALA VDQLLALIET GLRLRSRLRV ALGGLGLAAL
VIATLAPSLA SSKSTYVVGA KTFTEQYVLA ALIAQQLDDR GLPATIRAGL GSSVIYDALK
SGDIDAYVDY SGTLWANQFH HPGIAARDQV LSDLKGDLGR DGVTLLGELG FANAYALVMP
RARAEALGVR SIADLAARAP QMTIAGDYEF FSRPEWAELR RTYGLSFKTE RQMQPDFMYA
AVASGEVDLI AGYTSDGLIA KYDLVVLDDP RQAIPPYDAV LLVSPKRAGD TKLRDALSPL
VGRIDIAAMR AANLRAASGG GTGTPDVVAR ALWDSVKPR
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