| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2050 |
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| Symbol | |
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| ID | 4022532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2298539 |
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| End bp | 2300380 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637962243 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_569186 |
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| Protein GI | 91976527 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.145936 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCTA TGTTTATTCA CTACATGGCG CCGATCATGT TCGGCTCCCT GGTGATCTTC
CTGCTGCTCG GCTATCCGGT CGCTTTCTCG CTCGCCGCCA ACGGCCTGAT GTTCGCGTTC
ATCGGCATCG AACTCGGGTT GTTCCGGCCC GATTTCATGC AGGCCCTGCC CGATCGCGTC
TATGGCGTGA TGAACAACGA TACCCTGCTG GCGATTCCGT TCTTTACCTT TATGGGGCTT
GTGCTTGAAA GATCCGGCAT GGCCGAGGAC CTGCTCGAAA CCATCGGGCA GTTGTTCGGC
TCGATCCGCG GCGGCATCGC CTATGCGGTG GTGTTCGTCG GCGCGCTGCT CGCGGCCACC
ACCGGCGTGG TCGCCGCATC GGTGATCTCG ATGGGCCTGA TCTCGCTGCC AATCATGCTG
CGCTACGGCT ACGACCGCCG CGTCGCCACC GGCGTGATCG CCGCATCGGG CACGCTGGCG
CAGATCATCC CGCCGTCGCT GGTGCTGATC GTGATGGCCG ACCAACTCGG CCGTTCGGTC
GGCGACATGT ACGAAGGCGC GTTCATTCCC GGCATCGTGC TGTCGCTGCT TTATGCCGGG
TACATCTTCC TGGTGACGGT GTTCGCACCG AAGGCCGTGC CCGGTCTGCC GCTGGAAGCG
CAGACCCTGC GCGAACACGG CACCCTGCAG AGCCCGATGA TCCTGCCGCT CGCGGCGATC
TCGGCAGCCG CCGCCGCCTA TTTTTTCGCG GTGCATCTCG ACGGATTCAG CTGGAGCATG
CCGGCGTTCG ACAAGGTCGG CCTGTCCACG CTGGTGATGC AGGGCTTCTG GTTCGTGATC
CTGCTCGCGG TGCTGTTCCG GCCGTTCATC GGCCTGATCC GCACCATGAC GACCTCGCTG
TACCTGGTCG TGGTGTTGTC GACCACGATT GGCATCATCG CGATGCGCTA CACCGAGGTG
AAGAGCGGCG CGGACTACGT CGTGCTGACG ATGTCGGTGA CCGTCGGGCT GTCGTTCGTC
ATCGCCGTGA TCAACCGGTT TCTCCGCCTG AAGCTGCTGT CCAAACTCGC CGAGCAGGTC
GTGTTCGTGA TGGTGCCGCC GCTCGGGCTG ATCTTCCTGG TGCTCGGCAC CATCTTCATC
GGCGTAGCGA CCCCGACCGA GGGCGGCGCG ATGGGCGCCG CGGGCGCGGT GATTCTCGCG
CTGATGAAGG GCCGGCTGAC CTTCGACCTC ACCCGTCAGG CCACCGAGGC GACCGCCAAG
CTGTCGGCCT TCGTAGTGAT GATCCTGGTC GGCGCCCGCG TGTTCTCGCT GACCTTCTAC
GGCGTCGACG GCCATCGCTG GGTCGAGGAA CTACTGGTCG GCCTGCCCGG CGGACAGCTC
GGCTTCCTGA TTTTCGTCAA CGCTTTCGTG TTCGTGCTGG CGTTCTTCCT CGACTTCTTC
GAACTGGCTT TCATTGTCAT TCCCCTGCTT GGACCTGCTG CAGAGAAGCT CGGCATCGAC
CTGATCTGGT TCGGCGTCAT CATGGCCGTG AACATGCAGA CCTCGTTCAT GCACCCGCCG
TTCGGCTTCG CGCTGTTCTA TCTGCGCTCG GTGGCACCGA AGGAATCCTA TCTCGACAGG
GTCACCGGAA AACGGATGGC GCCGGTCACC ACCGGACAGA TCTACTGGGG CGCAGTGCCG
TTCGTGATCA TCCAGCTGAT CATGGTCGCC CTGGTGATCA CGTTCCCGGC GATGGTGATG
CACTACAAGG GCGTCGCCAG CACGGTCGAT CCGTCCAAGG TGCAGATCGA TATCCCGCAG
ATGGAGACCC CGCAGCTCGA CTTCGGCCCA CCGAAGTTCT GA
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| Protein sequence | MTAMFIHYMA PIMFGSLVIF LLLGYPVAFS LAANGLMFAF IGIELGLFRP DFMQALPDRV
YGVMNNDTLL AIPFFTFMGL VLERSGMAED LLETIGQLFG SIRGGIAYAV VFVGALLAAT
TGVVAASVIS MGLISLPIML RYGYDRRVAT GVIAASGTLA QIIPPSLVLI VMADQLGRSV
GDMYEGAFIP GIVLSLLYAG YIFLVTVFAP KAVPGLPLEA QTLREHGTLQ SPMILPLAAI
SAAAAAYFFA VHLDGFSWSM PAFDKVGLST LVMQGFWFVI LLAVLFRPFI GLIRTMTTSL
YLVVVLSTTI GIIAMRYTEV KSGADYVVLT MSVTVGLSFV IAVINRFLRL KLLSKLAEQV
VFVMVPPLGL IFLVLGTIFI GVATPTEGGA MGAAGAVILA LMKGRLTFDL TRQATEATAK
LSAFVVMILV GARVFSLTFY GVDGHRWVEE LLVGLPGGQL GFLIFVNAFV FVLAFFLDFF
ELAFIVIPLL GPAAEKLGID LIWFGVIMAV NMQTSFMHPP FGFALFYLRS VAPKESYLDR
VTGKRMAPVT TGQIYWGAVP FVIIQLIMVA LVITFPAMVM HYKGVASTVD PSKVQIDIPQ
METPQLDFGP PKF
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