| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2043 |
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| Symbol | |
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| ID | 4022525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2291255 |
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| End bp | 2292208 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637962236 |
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| Product | tRNA-dihydrouridine synthase A |
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| Protein accession | YP_569179 |
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| Protein GI | 91976520 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0148288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.331525 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGAGT GGACCGATAC GCGCTGCCGC GTATTCCATC GTCTGCTGAC CAGGCGCGGG
CGGCTCTACA CCGAGATGCT GACCTGCGGC GCGGTGATCC GTGGCGACCG GCAGCGGCTG
CTCGGGTTCG ACGCATCCGA ACATCCGGTG GCGCTGCAGC TCGGCGGTTC CAATCCGGCC
GACCTCGCGA CCGCCGCGAC GATCGGCGAA GACTTTGGCT ATGACGAGAT CAATCTCAAT
GTCGGCTGTC CGTCCGATCG GGTGAAGGAG GGCCGGTTCG GCGCCTGCCT GATGGCGGAG
CCGATGCTGG TCGCGGACTG TGTCGCCGCA ATGAAACGAG CGGTGACGAT TCCGGTGACG
GTCAAATGCC GGATCGGCAT CGACGATCAG GATCCGGAGA CGGCGCTCGA CAATCTGGCG
CAAAGCGTCG TCGCGGCCGG CGTCGATGCG CTGATCGTCC ATGCCCGCAA GGCCTGGCTC
AATGGCCTGT CGCCGAAAGA GAACCGCGAC ATCCCGCCGC TCGATTACGA TCGGGTGTAT
CGGCTGAAGC GGGCGATGCC CGCGGTTCCG ATCATCATCA ATGGCGGTAT CACCAGCATC
GCGCAGGCGA AGCAACATCT CGCTTATGTC GACGGCGTGA TGCTTGGACG CGCCGCCTAT
CAGGAGCCTT GGCGGCTGCT CGACGTCGAT CCCGAGCTGT TCGGCGAAGC TGCGCCCCAC
GCTACGATGA AAGACGCGCT CGAAGCTTTG ATGCCGTATA TCGAGGATCA GCTCGCGCAG
GGCGTGCGGC TGCATGCGAT CACCCGGCAT CTCATCGGCG CGTATCAGGG CGTGCCCGGC
GCGCGGGCTT TCCGGCGCTA CCTGTCCGAA TTCGGGGTGA AGCCGGACGC CGACGTCAGC
GTGTTGGCAA AGGCGATGGT CGCGGTCGGA GAGAGGACGT CCGAGGCGGC GTGA
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| Protein sequence | MMEWTDTRCR VFHRLLTRRG RLYTEMLTCG AVIRGDRQRL LGFDASEHPV ALQLGGSNPA
DLATAATIGE DFGYDEINLN VGCPSDRVKE GRFGACLMAE PMLVADCVAA MKRAVTIPVT
VKCRIGIDDQ DPETALDNLA QSVVAAGVDA LIVHARKAWL NGLSPKENRD IPPLDYDRVY
RLKRAMPAVP IIINGGITSI AQAKQHLAYV DGVMLGRAAY QEPWRLLDVD PELFGEAAPH
ATMKDALEAL MPYIEDQLAQ GVRLHAITRH LIGAYQGVPG ARAFRRYLSE FGVKPDADVS
VLAKAMVAVG ERTSEAA
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