| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2038 |
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| Symbol | |
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| ID | 4022520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2284752 |
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| End bp | 2285825 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637962231 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_569174 |
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| Protein GI | 91976515 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.213803 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCGC CGCGGATCAT TGGCGTGATC GCAGTCTGCG CGCTGGTCGC CGGCTGCCAG
GAGAAGGCCA GCCAACCGGA ACCGATCCGG CCGGTGCTGT CGACCGTCGT CGCGCCGCTG
GAGGCAACAA GCCTGGCCGT GGTCGGCACC GTCGAACCTC AGTTCAAGAC GGATTATGGC
TTTCGTGTAC TCGGGCGCCT GATCGCGCGC CCGGTCAATA TCGGCGACGT CGTCTCGAAG
GGGCAGGCGC TCGCTGCGAT CGATCCGTTC GCGGCGGAGC TGGCGGTCCG CTCGGCGCTG
GCCGACGTTG CGACGGCTCA GGCGCAATTG GCGAACGCCA ACGCCACCGC CAACCGCCAG
CGAACGCTGA TCGAAACCGG CGCGACCACC AAGGCGACGC TGGATTCCGC AGAGCAGAGC
AATTCGGCAG CGCAAGCTGC GGTCATTCGT GCCCAATCAA GCCTGACCAA GGCGCGCGAA
CAACTGAGCT ACACCAAACT CGAAAACGAA TATGCCGGGG TCGTCACCGC AGTCGGCGTG
CAGGTCGGAC AAGTCGTCAA TCCCGGTCAG ACCGTGGTGA CAGTTGCACG ACCGGATATC
CGCGAGGCGG TGATCGACGT CGCCGACGAT CTTGCTGGCG TTCTGCGGAC CGGCATGCCG
CTGACGGTGG CACTGCAACT GGATCCCCGA ATCCGCGTCG AGGGCAGAGT GCGTGAGATT
TCGCCGCAAG CCGATCCGGT GACCCGAGCA CGCCGGATCC GCATCACTCT CGACAATCCG
CCGGAGACGT TCCGGCTGGG ATCCACGATT ACGACGCTCA TTCCGGGGAA ACCGGCGCGG
GGATTTCGCT TGCCGGCAAC GGCGATCCTG ACGGAGGGCG GCCAATCGAG CGTCTGGATG
ATCGATCCCG CCGCCAAATC GGTCACCAAG CGCAAGGTGC AGGTCGTGAC CAATGACGAC
GGTTCGGTCG ATGTCGTCGA GGGAATCGAG GCCGGCGCGC GTATTGTGAC GGCGGGGGTG
CATCATCTCA AGCAAGGCCA GAAGGTCCGG TTCGAAGAGG GAAGTGTCTC GTGA
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| Protein sequence | MTSPRIIGVI AVCALVAGCQ EKASQPEPIR PVLSTVVAPL EATSLAVVGT VEPQFKTDYG
FRVLGRLIAR PVNIGDVVSK GQALAAIDPF AAELAVRSAL ADVATAQAQL ANANATANRQ
RTLIETGATT KATLDSAEQS NSAAQAAVIR AQSSLTKARE QLSYTKLENE YAGVVTAVGV
QVGQVVNPGQ TVVTVARPDI REAVIDVADD LAGVLRTGMP LTVALQLDPR IRVEGRVREI
SPQADPVTRA RRIRITLDNP PETFRLGSTI TTLIPGKPAR GFRLPATAIL TEGGQSSVWM
IDPAAKSVTK RKVQVVTNDD GSVDVVEGIE AGARIVTAGV HHLKQGQKVR FEEGSVS
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