Gene RPD_2030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_2030 
Symbol 
ID4022512 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2276430 
End bp2277356 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content65% 
IMG OID637962223 
Productpyrroloquinoline quinone biosynthesis protein PqqB 
Protein accessionYP_569166 
Protein GI91976507 
COG category[R] General function prediction only 
COG ID[COG1235] Metal-dependent hydrolases of the beta-lactamase superfamily I 
TIGRFAM ID[TIGR02108] coenzyme PQQ biosynthesis protein B 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.455844 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCGCG TCGTCGTTCT TGGAGCGGCG GCCGGCGGCG GCGTGCCGCA ATGGAATTGC 
GGCTGCTCCG TTTGTCGCGC CGCGTTTGCC GATCGTGACC TTCGACGCAC GCAGGCGTCG
ATGGCGGTCA GCGCGGATGG CGATCACTGG TTCCTGATCA ACGCGTCGCC CGATCTGCGC
CAGCAGGTGA TCGCGACGCC GCAGCTCCAT CCAAAGCCGG GCGCGCTGCG CCATTCGCCG
ATTGCGGGTG TGATCCTGAC CAATGGCGAG GTCGATGCGG TCGCGGGGCT GCTGTCGATG
CGCGAAGGAT CCCCGTTCGC GATCTACGCT CACGCCAAGG TGCTGGCGAT CCTGAAGGCC
AACAGCATCT TCAATGTGCT GAACGAGAAG CTGGTGTCGC GTCGGCCGAT CGAGACCGAT
CAGCGGTTCG AGCCGACGCT GCCGGACGGA ACCCTGTCGG GTCTCGACGT CGTTGCTTTC
TCGGTTCCCG GAAAGGGCGC CTGGTATCTC GAAGGGCAGG CGCACCCGGG CGGCGACGCT
GCCGATGGCG ATACCCTCGG CTTGACGATC ACCGACAAGG CGACAGGCCA ATCCATCCAC
GTGCTCACAG CCTGTGCGCG CGTGACCGAT GATCTGAAAG CGCGGCTCGC CGGTGCGCCG
CTGGTGTTGT TCGACGGAAC GGTGTGGCGC GACGACGAAT TGATCACCGC CGGGCTCGGC
CACAAGACCG GGCAGGCGAT GGGCCACATC GCGATGTCGG GCGACGAGGG TGCGATTGCC
GCGCTCGGCG ACCTCGACAT TGCGCGAAAA CTATTCGTGC ATATCAATAA CTCCAACCCT
GTACTGCTGA GCTGCTCCGC CGAGCGCGAA GCCGCCGAGC GAGCCGGTTG GCAAGTCCCT
GCGGATGGGA CGGAGGTGAC GCTGTGA
 
Protein sequence
MMRVVVLGAA AGGGVPQWNC GCSVCRAAFA DRDLRRTQAS MAVSADGDHW FLINASPDLR 
QQVIATPQLH PKPGALRHSP IAGVILTNGE VDAVAGLLSM REGSPFAIYA HAKVLAILKA
NSIFNVLNEK LVSRRPIETD QRFEPTLPDG TLSGLDVVAF SVPGKGAWYL EGQAHPGGDA
ADGDTLGLTI TDKATGQSIH VLTACARVTD DLKARLAGAP LVLFDGTVWR DDELITAGLG
HKTGQAMGHI AMSGDEGAIA ALGDLDIARK LFVHINNSNP VLLSCSAERE AAERAGWQVP
ADGTEVTL