| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2022 |
|---|
| Symbol | |
|---|
| ID | 4022504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2268201 |
|---|
| End bp | 2268986 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637962215 |
|---|
| Product | 5-carboxymethyl-2-hydroxymuconate delta-isomerase |
|---|
| Protein accession | YP_569158 |
|---|
| Protein GI | 91976499 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.241837 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.369682 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAT GGGTTCGCTT CCGCGCCGAC GGCGCGATCG GCTTCGGCAC CATCGCGCAT
TCCGACATCG CCGTGCATGA CGGCGAGATG TTCGGCGCCA ACAAGCCGAC CGGACAGACA
TTGCAACTCG GCGATGTCGA GCTGCTTGCG CCCTGCGCGC CGCGCAAGAT CATCGGGCTG
TGGAACAATT TTCACGCACT GGCCGCCAAG CTCAATCAAT CGGTCCCGCC GGAGCCGTTG
TACTTCCTGA AGGCGACCAC CAGCGTCGCC GCGCATGGCG CCGTCGTCGA TCGTCCGGCC
TCGTATGACG GCAAGGTGGT GTATGAGGGC GAACTCGGCG TCGTGATCGG CAAAGAGTGC
CGGGGCGTCT CCGAGGCCGA CGCGGCCTCG CACATCTTCG GCTACACCTG CGTCAACGAC
ATCACCGCAG CCGACATCCT CAATCGCGAC CCGAGCTTCC CGCAATGGTC GCGCGCCAAG
AGCTTCGACG GCTTCGGCCC GTTCGGGCCT GCGATCGTCG CCGGCCTGGA TCCCGCGACG
CTGTCGATCC GCACCATTCT GAACGGCGCC GAGCGGCAGA ACTATCCGGT TGCGGACATG
ATCTTCAGCC CCGCGAGGCT GGTCAGCCTG ATCTCGCGCG ACATGACGCT CGAGCCCGGC
GACCTGATCT GCTGCGGCAC CTCGGTCGGC GTCGGCGTGA TGAAGGAGCC GGTCAACAGC
GTCACCATCG CGATCGAAGG TATCGGCGAG TTGCACAACG AATTCCGTCA GGCGGTGAAA
GCGTAA
|
|---|
| Protein sequence | MTKWVRFRAD GAIGFGTIAH SDIAVHDGEM FGANKPTGQT LQLGDVELLA PCAPRKIIGL
WNNFHALAAK LNQSVPPEPL YFLKATTSVA AHGAVVDRPA SYDGKVVYEG ELGVVIGKEC
RGVSEADAAS HIFGYTCVND ITAADILNRD PSFPQWSRAK SFDGFGPFGP AIVAGLDPAT
LSIRTILNGA ERQNYPVADM IFSPARLVSL ISRDMTLEPG DLICCGTSVG VGVMKEPVNS
VTIAIEGIGE LHNEFRQAVK A
|
|---|
| |