| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2011 |
|---|
| Symbol | |
|---|
| ID | 4022493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2249476 |
|---|
| End bp | 2251056 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637962204 |
|---|
| Product | peptidase S1C, Do |
|---|
| Protein accession | YP_569147 |
|---|
| Protein GI | 91976488 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.963752 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC GAAATACCGA TCTTCCCTCG CAGCCGTCCC GCCAGCCGGA TCGCCGATCG
CTGCTGTCAG CGCGCAAATT CGCGCTGATG GCCTCGGTGG TCGCCGGTCT CGGCGCGGGC
GCGTTCGGCC TGTCGCAGAC CTCGACGCCG GTCGATCTGT TCAGCACGCC GGCGCATGCG
CAGGTCGGCA ACAAGGTCAA CCAGGCTCAG CAGCCGGTGG GCTTCGCCGA TATCGTCGAG
AAGGTGAAGC CGTCGGTGAT CTCGGTGAAG GTCAACATCG CCGAGAAGAC GGCGAAGAAC
GAGGATCGCG CCGAAGACTC GCCGTTTCAG CCGGGCTCCC CGATGGAGCG CTTCTTCCGC
CGCTTCGGCG GTGAGATGCC CCCCGGTATG CGCGGCCATC GCGGCGGCGG CACGATGACC
GGGCAGGGCT CGGGCTTCTT CATCTCGGCT GACGGCTACG CCGTGACCAA CAATCACGTC
GTCGACGGCG CCGACAAGGT CGAGGTCACC ACCGACGACG GCAAGACCTA CAAGGCCAAG
GTCATCGGCA CCGACCAGCG TACCGATCTG GCGCTGATCA AGGCCGAGGG CCGCACCGAC
TTCCCGTTCG CCAAGCTGTC CGAGGGCAAG CCGCGGATCG GTGATTGGGT GCTCGCGGTC
GGCAATCCGT TCGGCCTCGG CGGCACCGTC ACCGCCGGCA TCGTCTCGGC CTCCGGCCGC
GACATCGGCA ATGGTCCGTA CGACGATTTC ATCCAGATCG ACGCGCCGGT GAACAAGGGC
AATTCCGGTG GCCCGGCGTT CGACACCAAC GGCGAAGTGA TGGGCGTCAA CACCGCGATC
TACTCGCCGT CCGGCGGCAG CGTCGGCATC GCGTTCTCGA TCCCCGCCAG CACCGTCAAG
ACGGTGGTGC AGCAGCTCAA GGACAAGGGT TCGGTGAGCC GCGGCTGGAT TGGCGTGCAG
ATCCAGCCGG TCACGCCGGA GATCGCCGAC AGCCTCGGGC TGAAGAAGCC CGACGGCGCG
CTGGTCGCCG AGCCGCAGCC CAATGGTCCG GCGGCGAAGG CGGGCATCGA ATCCGGCGAC
GTCATCACCG CGGTCAACGG CACGCCGGTG AAGGACGCGC GCGAACTCGC CCGAACCATC
GGCGGCTTCG CGCCGGGCAA TACGGTGAAG CTCACCGTGG TGCACAAGGG CGCGGACCGC
GAGCTCAACC TGACGCTCGG CCAATTGCCG AACCAGGTCG AGGCCAAGGT CAATGATGGT
GGCGACAACG GCAACAGTTC CAGCCGAGGC ACAGAGGTGC CGAGGCTCGG CCTGACGGTC
GCGCCGGCCA GCTCGGTCGC AGGCGCCGGC AAGGACGGCG TCGTCGTCAC CGACGTCGAT
CCCAAGAGCG CCGCAGCCGA CCGCGGCTTC AAGGAAGGCG ATGTGATTCT CGAGGTCGCG
GGCAAGAACG TGGCCAGCCC CGGCGATGTT CGCGAGGCGA TCAACACCGC CAAGGCCGAC
AACAAGAACA GCGTGCTGAT CCGGGTTCGC TCGGGTGGTT CGTCGCGTTT CGTCGCGGTG
CCGATCTCCG CCAAGGGCTG A
|
|---|
| Protein sequence | MTDRNTDLPS QPSRQPDRRS LLSARKFALM ASVVAGLGAG AFGLSQTSTP VDLFSTPAHA
QVGNKVNQAQ QPVGFADIVE KVKPSVISVK VNIAEKTAKN EDRAEDSPFQ PGSPMERFFR
RFGGEMPPGM RGHRGGGTMT GQGSGFFISA DGYAVTNNHV VDGADKVEVT TDDGKTYKAK
VIGTDQRTDL ALIKAEGRTD FPFAKLSEGK PRIGDWVLAV GNPFGLGGTV TAGIVSASGR
DIGNGPYDDF IQIDAPVNKG NSGGPAFDTN GEVMGVNTAI YSPSGGSVGI AFSIPASTVK
TVVQQLKDKG SVSRGWIGVQ IQPVTPEIAD SLGLKKPDGA LVAEPQPNGP AAKAGIESGD
VITAVNGTPV KDARELARTI GGFAPGNTVK LTVVHKGADR ELNLTLGQLP NQVEAKVNDG
GDNGNSSSRG TEVPRLGLTV APASSVAGAG KDGVVVTDVD PKSAAADRGF KEGDVILEVA
GKNVASPGDV REAINTAKAD NKNSVLIRVR SGGSSRFVAV PISAKG
|
|---|
| |