| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1956 |
|---|
| Symbol | |
|---|
| ID | 4022438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2195992 |
|---|
| End bp | 2197059 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637962149 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_569092 |
|---|
| Protein GI | 91976433 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3049] Penicillin V acylase and related amidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.550247 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.436051 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCGT TCAGGCGTCG TTTCGTCACC GCATCCGCCG CAGCGCTTCT GATCGGAGGC
GCCCTGCTTC CGCCGGTGGC GCAGGCGTGC ACCCGTCTGG TCTATCTCGG CGCCGACAAT
CAGGTGATCA CCGCCCGCTC GATGGACTGG TCGCGCGACA TCGGCACCAA TCTCTGGATC
TTGCCGCGCG GTATCAAGCG CTCCGGCGAG GCCGGGCCGA ACTCGCTGCA ATGGACCGCG
CGTTACGGCA GCGTGATCGC CTCGGCCTAT GACATCGCGA CCTCGGACGG CGTCAACGAG
GCCGGGCTGG TCGCGAACGT GCTGTGGCTC GCGGAATCGA CCTATCCGAA ACTCGACGGC
AGCAAGCCGG GTCTCGCGCT GTCGCTGTGG CCACAATATG TGCTCGATAG TTTCGGCACC
GTGCAGGAGG CGGTCGAGGC GCTGGCGAAA CAGCCGTTCA CCGTCGTCAC AGCCCAGTTG
CCCGACGAGA ACCGGCTGGC CACAGTACAT CTGTCGCTGT CGGATTCGAC CGGCGACAGC
GCCATCATCG AATATATCGA TGGCCAGCAG GTGATCCATC ACGGCCGGCA ATATCAGGTG
ATGACCAATT CGCCGACCTT CGATCAGCAG CTCGCGCTCA ACGCCTATTG GAAGCAGATC
GGCGGCACCG TGATGCTACC CGGCACCAAC CGCGCGGCCG ACCGCTTCGC CCGCGCGTCG
TTCTACGTCG ACGCGATCCC GAAGGCGGAA AACCCGGTCG AAGCGATCGC CAGCGTGTTC
GGCGTGATCC GCAACGCCTC GGTGCCTTAC GGCATCACCA CGCCCGATCA GCCGAACATC
TCCTCGACGC GCTGGCGCAC CGTCGTCGAC CACAAGCGCA AGCTCTACTT CTTCGAATCC
GCGCTGACCC CGAACGTGTT CTGGGTCGAC CTCACCCGGA TCGATTTTTC CGCCGACAAA
GGCGCGGTCA AGAAGCTCGA CCTCGGCGCC AACCAGACCA ACACCTTTTC GGGCGTGGTC
AATGATCAGT TCAAGGTCAG TCCGCCGTTC AAATTTCTCG GGCTGTGA
|
|---|
| Protein sequence | MIPFRRRFVT ASAAALLIGG ALLPPVAQAC TRLVYLGADN QVITARSMDW SRDIGTNLWI
LPRGIKRSGE AGPNSLQWTA RYGSVIASAY DIATSDGVNE AGLVANVLWL AESTYPKLDG
SKPGLALSLW PQYVLDSFGT VQEAVEALAK QPFTVVTAQL PDENRLATVH LSLSDSTGDS
AIIEYIDGQQ VIHHGRQYQV MTNSPTFDQQ LALNAYWKQI GGTVMLPGTN RAADRFARAS
FYVDAIPKAE NPVEAIASVF GVIRNASVPY GITTPDQPNI SSTRWRTVVD HKRKLYFFES
ALTPNVFWVD LTRIDFSADK GAVKKLDLGA NQTNTFSGVV NDQFKVSPPF KFLGL
|
|---|
| |