Gene RPD_1940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1940 
Symbol 
ID4022422 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2179307 
End bp2179723 
Gene Length417 bp 
Protein Length138 aa 
Translation table11 
GC content65% 
IMG OID637962133 
ProductMucR family transcriptional regulator 
Protein accessionYP_569076 
Protein GI91976417 
COG category[K] Transcription 
COG ID[COG4957] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00262472 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.275978 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGACC CCGCGGGCAA GAGCTTCATC GAACTGACCG CGACCATCGT CTCCGCTTAT 
GTCAGCAACA ATCCGACGCC GGCGGGCGAG ATTCCCGGCC TGATCGGGCA GGTGCACGCC
GCTTTGCAGC GGCTGTCGAG CGGCCGCCCC GAGACTCCGG CGCTGGAGCC GGCGAAGCCC
GCGGTTCCGC TGAAGAAGTC GATGACGCCG GAATATTTGA TCTGCCTGGA GGACGGCAAA
CGCTTCAAAT CGCTGAAGCG GCATCTGCGC ACCCAATACA AGATGACCCC GGAGCAATAC
CGCGAGAAAT GGGGACTGCC GGCCGACTAC CCGATGGTCG CGCCGAACTA CGCCGTGGAG
CGCTCGCAGC TCGCCAAGAA AATGGGGTTG GGGCAGCAGC GCCGGCGGCG GAAATAG
 
Protein sequence
MSDPAGKSFI ELTATIVSAY VSNNPTPAGE IPGLIGQVHA ALQRLSSGRP ETPALEPAKP 
AVPLKKSMTP EYLICLEDGK RFKSLKRHLR TQYKMTPEQY REKWGLPADY PMVAPNYAVE
RSQLAKKMGL GQQRRRRK