| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1936 |
|---|
| Symbol | |
|---|
| ID | 4022418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2173810 |
|---|
| End bp | 2175420 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637962129 |
|---|
| Product | protein of unknown function DUF853, NPT hydrolase putative |
|---|
| Protein accession | YP_569072 |
|---|
| Protein GI | 91976413 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0433] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.495042 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGA GCGAAACCGG CCACGACGAT ATCGATGGCA AGATCTTCAT CGGCAAGGGC
GAGCAGCCGG CATGGCTCAC GCTCGGCCTC GCCAATCGCC ACGGCCTCGT CACCGGCGCC
ACCGGCACCG GCAAGACAGT GTCGCTGCAG GTGATGGCCG AAGGCTTTGC GCGCGCCGGC
GTGCCGGTGT TCGCCGCCGA CATCAAGGGT GATCTCTCGG GCATCGCCGA AACCGGCGAG
GCGAAAGATT TCATCCTCAA GCGCGCGAAG GAGATGGGTC TGGCTTTTCA GCCTGATCAG
TTCAGCACAG TGTTCTGGGA CGTGTTCGGC GAGCAGGGCC ATCCGGTGCG GGCCACTGTC
TCGGAGATGG GACCGCTGCT GCTGTCGCGG ATGCTCGATC TCAACGACGT GCAGGAAGGT
GTGCTCAACG TCGCGTTCCG TGTCGCCGAC GACATGGGCC TGCCGCTGGT CGACATGAAG
GATCTGCGCG CGATGCTCGA TGCGATCGCG CCGATCGCCG CGAAGGTTGC CGAGAACGGC
GACGTCAACG CCGACATCAG ACAGGCGGCG CAGGCGCTCG GCAACGTCAC CAAGCAGACT
GTCGGCACCA TTCAGCGTCA GCTGCTCGTG CTGGAGAATC AGGGCGGCGA GAGTTTCTTC
GGCGAGCCCG CATTGCAGTT GAAGGACTTC ATCCGCACCG ACAATCAGGG CCGCGGCCTC
GTCAACATCC TGGTCGCAGA CAAGCTGATG ACCAATCCCA GGTTGTACGC GACCTTCCTG
CTGTGGATGT TGGCGGAGCT GTTCGAGGAG TTGCCCGAAG TCGGCGATCC GGACAAGCCG
AAGCTGGTGT TCTTCTTCGA CGAGGCGCAT CTGCTGTTTA ACGACGCGCC GAAGCCGCTG
ATGGATAAAA TTGAACAGGT CGTGCGACTG ATCCGCTCCA AGGGCGTCGG CGTCTACTTC
GTCACGCAGA ACCCGATCGA CGTGCCGGAT CGCGTGCTGG CGCAACTCGG CAACCGGGTG
CAGCACGCGT TGCGCGCATT CACCCCGCGC GACCAGAAGG CGGTCGCGGC GGCGGCGACC
ACGTTCCGAC CCAATCCCAA GCTCGACACC ACCAAGGCGA TCACCGAACT CGGCAAAGGC
GAGGCGCTGG TGTCGTTCCT CGAAGGCAAC GGCACGCCGG CGATGGTCGA GCGCGTGATG
ATCCGACCGC CCGCGGCCCG TATCGGGCCG ATCACGCCGG AGGAGCGCAA GGCGATCATC
GCCGCGAGCC CGGTGAGGGG AAAGTACGAC ACCGCAATCG ATTCCGACTC CGCCTATGAG
AAGTTGCGCG ATCGCATTGA GAACAAGAAT GCGGGCGCCG AAGGCGCGCC GGCCGAAGGC
GGCATTCTCG GCCAGCTCGG CAGCATCGTC TCGACCGTGT TCGGCACCAG CGCGCCGCGC
GGCAAGCTCA CCACCGGGCA GGTGGTGGCG CGCAATGTCG CGCGCAGCGT CACCAACACG
GTGATCGGCG GCATCGCCGC CGATCTCGGC AAGCGCGTCG GCGGTTCGCT CGGCGGATCG
GTCGGGCGCT CGATCGTCCG CGGTACGCTC GGCAGTCTGC TGCGCCGCTG A
|
|---|
| Protein sequence | MTASETGHDD IDGKIFIGKG EQPAWLTLGL ANRHGLVTGA TGTGKTVSLQ VMAEGFARAG
VPVFAADIKG DLSGIAETGE AKDFILKRAK EMGLAFQPDQ FSTVFWDVFG EQGHPVRATV
SEMGPLLLSR MLDLNDVQEG VLNVAFRVAD DMGLPLVDMK DLRAMLDAIA PIAAKVAENG
DVNADIRQAA QALGNVTKQT VGTIQRQLLV LENQGGESFF GEPALQLKDF IRTDNQGRGL
VNILVADKLM TNPRLYATFL LWMLAELFEE LPEVGDPDKP KLVFFFDEAH LLFNDAPKPL
MDKIEQVVRL IRSKGVGVYF VTQNPIDVPD RVLAQLGNRV QHALRAFTPR DQKAVAAAAT
TFRPNPKLDT TKAITELGKG EALVSFLEGN GTPAMVERVM IRPPAARIGP ITPEERKAII
AASPVRGKYD TAIDSDSAYE KLRDRIENKN AGAEGAPAEG GILGQLGSIV STVFGTSAPR
GKLTTGQVVA RNVARSVTNT VIGGIAADLG KRVGGSLGGS VGRSIVRGTL GSLLRR
|
|---|
| |