| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1927 |
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| Symbol | |
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| ID | 4022409 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2163550 |
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| End bp | 2165709 |
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| Gene Length | 2160 bp |
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| Protein Length | 719 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637962120 |
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| Product | methylmalonyl-CoA mutase |
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| Protein accession | YP_569063 |
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| Protein GI | 91976404 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.273596 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.727114 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGA TTCCGAACTT CGCCGAGATC GCGTTCCAGA CCGCCGGCAC CGCCGCTCCT
GCGGGGCGGG CCGAGCCGTG GCTGACGCCC GAGGGCATTC TGGTCAAGCC GGGCTACAGC
GAGGCCGATC TCGAAGGCAT CGATTTCCTT GATACCTGGC CGGGCCTCGC GCCATTCCTG
CGCGGCCCCT ACCCGACCAT GTATGTCAAT CAGCCGTGGA CCATCCGGCA ATATGCCGGC
TTCTCCACCG CGGAAGATTC CAACGCGTTC TATCGCCGCA ACCTCGCCGC CGGCCAAAAG
GGCCTGTCGG TGGCGTTCGA CCTCGCCACC CATCGCGGCT ACGACAGCGA TCATCCGCGC
GTCGCCGGCG ACGTCGGCAT GGCGGGCGTG GCGATCGACA GCATCTACGA CATGCGCACG
CTGTTCGCCG GCATCCCGCT CGACCAGATG AGCGTGTCGA TGACCATGAA CGGCGCGGTG
CTGCCGATCC TGGCGCTGTT CGTCGCCGCC GCCGAAGAAC AGGGCGTGCC GCCGGAGAAA
CTGTCGGGCA CCATTCAGAA TGACATTCTG AAAGAGTTCA TGGTGCGCAA CACCTACATC
TATCCGCCGA CGCCCTCGAT GCGGATCATC TCCGACATCT TCGCCTATAC CTCGACGAAG
ATGCCGAAGT ACAACTCGAT CTCGATCTCC GGCTATCACA TGCAGGAGGC CGGCGCGACG
CAGGACCTCG AGCTCGCTTA CACGCTCGCC GACGGGGTCG AGTATCTGCG CGCCGGCATC
GCCGCCGGGC TCGACGTCGA CCGCTTCGCG CCGCGGCTGT CGTTCTTCTG GGCGATCGGC
ATGAACTTCT TCATGGAAGT CGCCAAGATG CGCGCGGCGC GGCTGTTGTG GGCCAAGTTG
CTGACCCAGT TCAACCCGAA GGATCCGAAA TCGCTGTCGC TGCGCACCCA TTGCCAGACC
TCCGGCTGGT CGCTGACCGC ACAGGACGTC TACAACAACG TGATGCGCAC TACGATCGAG
GCGATGGCGG CGACGCAGGG CCACACCCAG TCGCTGCACA CCAACGCACT CGACGAAGCG
CTGGCGCTGC CGACCGATTT CTCGGCGCGG ATCGCCCGCA ACACCCAATT GTTCCTGCAG
CAGGAAAGCG GCACCAACCG CATCATCGAT CCGTGGGGCG GCTCCTACTA TGTCGAGCGG
CTGACCCACG ATCTCGCGGT GAAGGCCTGG GGCCACATCC AGGAGGTCGA GGCGCTCGGC
GGCATGGCCA AGGCGATCGA GGCCGGTGTG CCGAAGCTGC GGATCGAGGA AGCCTCGGCC
AAGACCCAGG CGCGAATCGA TACCGGCCGG CAGTCGGTGA TCGGCGTCAA CAAGTACAAG
CCGACCGACG AGGCGGCGAT CGACGTGCTC AAGGTCGAGA ACTCGACCGT GCGCCGGCTG
CAGATCGACA AGCTGAAGCG TCTGCGCGGC GACCGCAGCC AGGCCGATGT CGACGCGGCG
CTCGCGGCGC TGACACGCTC GGCCGCGGAC GGCAACGGCA ATCTGCTGGC GTTGGCGATC
GATGCCGCAC GGCTGAAGGC CACCGTCGGC GAAATCTCCG ACGCGCTGGA GAAGGTCTAT
GGCCGGCATC GCGCCGAGAT CAGGTCGATC ACCGGCGTCT ACAAACGGGA GGTCGCGGGC
ATGGCAAACC GGATGGAGCG AGTGCAGGCG CTGATCGATG CGTTCGAGGA CGCCGAGGGA
CGACGGCCGC GCATCCTGGT CGCCAAGATC GGCCAGGACG GCCACGACCG CGGCCAGAAG
GTGATCGCCT CGGCCTTCGC CGACATCGGC TTCGACGTCG ATATCGGGCC GCTGTTCGCC
ACCGCCGAGG AAGCGGCGCG GCAGGCGGTG GAGAACGACG TCCACATTCT CGGCGTATCG
TCGCTCGCCG CCGCGCATCT GACCGCAGTG CCGGAGCTGA AGGCGGCGCT GAAGCAGCAG
GGCCGCGACG ACATCATGGT CATCATCGGC GGCGTGGTGC CGCCGCAGGA CTACGACGCG
CTGATCAAGG CCGGCGCCGA GGCGATCTTC CCGCCCGGCA CGGTGATCGC CGACGCCGCC
GAGGAGCTGA TCCACAAACT CAACGCCCGG CTCGGCCACG CCAGCCAGGC GGCGGAGTAG
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| Protein sequence | MTKIPNFAEI AFQTAGTAAP AGRAEPWLTP EGILVKPGYS EADLEGIDFL DTWPGLAPFL
RGPYPTMYVN QPWTIRQYAG FSTAEDSNAF YRRNLAAGQK GLSVAFDLAT HRGYDSDHPR
VAGDVGMAGV AIDSIYDMRT LFAGIPLDQM SVSMTMNGAV LPILALFVAA AEEQGVPPEK
LSGTIQNDIL KEFMVRNTYI YPPTPSMRII SDIFAYTSTK MPKYNSISIS GYHMQEAGAT
QDLELAYTLA DGVEYLRAGI AAGLDVDRFA PRLSFFWAIG MNFFMEVAKM RAARLLWAKL
LTQFNPKDPK SLSLRTHCQT SGWSLTAQDV YNNVMRTTIE AMAATQGHTQ SLHTNALDEA
LALPTDFSAR IARNTQLFLQ QESGTNRIID PWGGSYYVER LTHDLAVKAW GHIQEVEALG
GMAKAIEAGV PKLRIEEASA KTQARIDTGR QSVIGVNKYK PTDEAAIDVL KVENSTVRRL
QIDKLKRLRG DRSQADVDAA LAALTRSAAD GNGNLLALAI DAARLKATVG EISDALEKVY
GRHRAEIRSI TGVYKREVAG MANRMERVQA LIDAFEDAEG RRPRILVAKI GQDGHDRGQK
VIASAFADIG FDVDIGPLFA TAEEAARQAV ENDVHILGVS SLAAAHLTAV PELKAALKQQ
GRDDIMVIIG GVVPPQDYDA LIKAGAEAIF PPGTVIADAA EELIHKLNAR LGHASQAAE
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