| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1910 |
|---|
| Symbol | |
|---|
| ID | 4022392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2147776 |
|---|
| End bp | 2148351 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637962103 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_569046 |
|---|
| Protein GI | 91976387 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACGCCGA ATTGGCTTGT GGGAGCGTGT GTGCGCGGAC GTGACGACGA GTGGACCGAC
CTGATGCGGT CGGCCAATGC CGGCGACGGC GTCGCGTATC GGCGGCTGCT TATGGCCGTC
GCGCCTGTTC TGCGGGCGGG CGCGCGCCGC GGTCTGGTGC GGGCCGGGCA GCCGGTCGAT
CAAGCCGAGG ACATCGTGCA GGATATTCTG TTGGCCGTGC ATCTGAAGCG ACACACCTGG
GATCCGAGTG CGCCGTTCGC GCCTTGGCTG TTCGCGATCG CGCGCAACAA GCTGATCGAC
GCGCTGCGCC GCCGCGGAAG GCGTGTGTTC GTCAATATCG ACGATTTCGC CGAGACGATC
CCGAGCGAAC AGGCGCAGGA GACGCTGCCG GCCGGCGAAG TGACGCGCCA CCTCGAGGCG
CTGCCGCAGC GCCAACGCGA GGTGCTGCAA TCGATCGCGG TCGACAGCGT CTCGATCAAG
GACACCGCAA GGAAGCTGTC GATGAGCGAG GGCGCGGTGC GGGTGGCGCT GCATCGCGGC
TTGTCGGCGC TCGCAGCCAA GATGAGATCG GTCTGA
|
|---|
| Protein sequence | MTPNWLVGAC VRGRDDEWTD LMRSANAGDG VAYRRLLMAV APVLRAGARR GLVRAGQPVD
QAEDIVQDIL LAVHLKRHTW DPSAPFAPWL FAIARNKLID ALRRRGRRVF VNIDDFAETI
PSEQAQETLP AGEVTRHLEA LPQRQREVLQ SIAVDSVSIK DTARKLSMSE GAVRVALHRG
LSALAAKMRS V
|
|---|
| |