| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1894 |
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| Symbol | |
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| ID | 4022376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2124876 |
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| End bp | 2127281 |
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| Gene Length | 2406 bp |
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| Protein Length | 801 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637962087 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_569030 |
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| Protein GI | 91976371 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.261021 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.664917 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAGAG TATGGAATTG TCTCGAAACA CAGCATGACT GGCGACTGCT TCTGGTCGCC
GGGCTCGTCG GCTTTCTCAC CAGCCTCGCT GCCGTCAATC TGTATCAGCG CGCACGCGGC
GATACCGAAC GGCCGAACCT GTCCTGGCTG CTCACCGCCG GCGTAGTCAC CGGCGTCGGC
ATCTGGTCGA CCCACTTCAT CGCGATGCTG GCCTATCTGC CGGGGTTCGA CTTCGATTTC
GATTTCAGTC TGACGATCGC TTCGCTGATC GTCGCCGCCG TGATGGCTAC GCTCGGTCTG
TCGGTTGCGG CCTACGGGGA AGCGCGTTGG ACGACGGTCG TCGGCGGTGG ATTGGTCGGC
GCCGGCATTG CCGCGATGCA CTTCATGGGC GTGACGTCGC TTAATTTCGC GACCCTGTGG
GATTGGGACC TCGTCGCCGT CGCGCTTCTG TTCGGACTGT CGCTGTCGGT CGGCGCTGTC
GCCCTCGCGC AGCGTGGCGA GACGCTGCGG TCTTTGGCCG GCGCTGCTGG GCTACTGGCG
CTTGCGATCG GCTCACATCA CTTCATCGCC ATGGGCGCGA TGGACGTTCT GCGCCCGATC
CAGATCTACG ACGCCACCGG TCGAATCTCG CCGCTGACGC TGTGTCTGAC GATCGCTGTC
GTGACCGGCG CAATCGCCGT TGCCGCTCTG CTCGTCGCTC TGGTCGATCG TCGGAGCAAT
CGGCGGGTCG CGGAGCGTAG TATGCAACTC GACGTCGCCC TCAACAATAT GGGCCGAGGC
CTGTGCATGT TCGATGTCGG TGGTCGGGTG CAGCTGTTCA ACTCGCAGTA TCTGGAGATG
TACAATCTGC GCGCAAGCGA TATCAGGAGC GGCGACGATC TCGATCGTCT GCTGCATCTG
AAGACGGCGG TGGGGACGAG CCCCAGCGAT GTCGACGCGC ATTGTGGGCA TCTGTCGGCG
GCGATCGCCG AGCGGATTCC GGCGGACTGG ATGACCGCGC TTCCGGATGG CCGCAAGATT
CACGTCACCT ATCAGCCGAT CGCCAATGGC GGATGGGTCA TCACGCATGA GGACTGTACC
GAGCGGGTGC AGAACCGCGC CCGGATCGAC TTTCTGGCGC ATCACGACGC CCTGACGCAA
TTGCCAAACC GAATCGCCTT CGACAGGCAC CTCGAAGAAG CAATCCTTCG CGCCAAGGCG
ACGCGGTCGA GTTTTGCGGC GATCTGTGTC GATCTCGACC GCTTCAAGGA GATCAACGAC
GTCTATGGGC ACGGCGCCGG CGACGCGTTT CTCCGCGACG TCGCGCGGCG GCTGACCGCG
GCGGGCGATG GCGCATTTGT CGCCCGGATC GGCGGAGACG AATTTGTGAT CGTGGTAGAA
AAGGGCGTCC AGCCGAGAGC CGCGGAAGAG CTGTGCGGGC GGATCGTCCG AGCGTTCGAT
TTGGATTTCC AGTTGAAAGG TGGCGCCGTC AAGGGAGGGT GCTCGATCGG CGTCGCGATC
TATCCGGACA ACGGCAGCAG CGCGGAAGAG TTGATCGCGA ACGCCGATGC TGCTCTCTAT
CGGGTGAAGG CCGACCAGCG GGGCTCGTTC CGGTTCTTCG AAACGACGCT CGACGCCAGC
CTGCGCGAGA AGCGTATGCT GCACAAGGAA CTGATCGAGG CGGTCGAGGC CGAACAGTTT
GAGCCGTTTT TCCAGCCGCA GGTGACGGCG TCGGGGGAGG TCGTCGGCTT CGAAGTGCTG
GGGCGCTGGC GTCATCCGAA CCGCGGTCTG GTGATGCCGG CGCGTTTCAT TGCGCTCGCG
GAAGAGACCG GGCTGATCAG CGGAATCGAC GAGCAGATCC TGCGTGCGGC CTGCCGAGAG
GCGGCGTCGT GGGACAGGCC GCTGTCGATC GCTGTCAATC TGTCGCCGAT CGATTTCCGA
CGCGGCGACG TGGCGTCGAT GATCCTGTCG ATCTTGTTCG AGACCGGGCT GAGTCCGGGC
CGCCTGAACG TCGAGATCAC CGAGGGCGTC CTAATGCAGG ACGACGGCCG CGCGATGAGC
CAATTGCGCC GCATCAGGGA TCTCGGCGCG CATCTGGCGA TGGACGATTT TGGCAGCGGC
TACTCTTCAT TGTCATATCT GCAGGCGTTT CCGTTCGACA AGATCAAAAT CGACGGAACT
TTCGTGGCGC AGCTCGGCAG CAATCCGCAG TCGCGGGCGA TCGTCAGGGC GATCATCGGG
CTCGGGCACA GCCTCGGCCT GTCTGTCATC GCCGAGGGCG TTGAGACGAA CGCGCAATTC
GAACTCCTGG TCGCTCTGGG GTGTGACGAA TTCCAGGGCT ATCTGATCGG CCATCCTGCG
CCGGCCGCGG CATATCGCGA TTTGACCAGT GCTGAGAGCG CGACGCCTGC GTCGATCGCG
GTCTGA
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| Protein sequence | MLRVWNCLET QHDWRLLLVA GLVGFLTSLA AVNLYQRARG DTERPNLSWL LTAGVVTGVG
IWSTHFIAML AYLPGFDFDF DFSLTIASLI VAAVMATLGL SVAAYGEARW TTVVGGGLVG
AGIAAMHFMG VTSLNFATLW DWDLVAVALL FGLSLSVGAV ALAQRGETLR SLAGAAGLLA
LAIGSHHFIA MGAMDVLRPI QIYDATGRIS PLTLCLTIAV VTGAIAVAAL LVALVDRRSN
RRVAERSMQL DVALNNMGRG LCMFDVGGRV QLFNSQYLEM YNLRASDIRS GDDLDRLLHL
KTAVGTSPSD VDAHCGHLSA AIAERIPADW MTALPDGRKI HVTYQPIANG GWVITHEDCT
ERVQNRARID FLAHHDALTQ LPNRIAFDRH LEEAILRAKA TRSSFAAICV DLDRFKEIND
VYGHGAGDAF LRDVARRLTA AGDGAFVARI GGDEFVIVVE KGVQPRAAEE LCGRIVRAFD
LDFQLKGGAV KGGCSIGVAI YPDNGSSAEE LIANADAALY RVKADQRGSF RFFETTLDAS
LREKRMLHKE LIEAVEAEQF EPFFQPQVTA SGEVVGFEVL GRWRHPNRGL VMPARFIALA
EETGLISGID EQILRAACRE AASWDRPLSI AVNLSPIDFR RGDVASMILS ILFETGLSPG
RLNVEITEGV LMQDDGRAMS QLRRIRDLGA HLAMDDFGSG YSSLSYLQAF PFDKIKIDGT
FVAQLGSNPQ SRAIVRAIIG LGHSLGLSVI AEGVETNAQF ELLVALGCDE FQGYLIGHPA
PAAAYRDLTS AESATPASIA V
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