Gene RPD_1883 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1883 
Symbol 
ID4022365 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2112250 
End bp2112726 
Gene Length477 bp 
Protein Length158 aa 
Translation table11 
GC content67% 
IMG OID637962076 
Productphenylacetic acid degradation-related protein 
Protein accessionYP_569019 
Protein GI91976360 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism 
TIGRFAM ID[TIGR00369] uncharacterized domain 1 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.128137 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGGTCAA ATGCCGGGCA CGTTCCCGAC GAAAGCAACC GCATGACCGA CACCACATCC 
ATCGCCGACG GCATTCCCGC CGGCTTCGTG CGGCATACCC GTGCCAGCCC ACTCACCGCG
CCATGGGAGC CGCTCTATGC GATGATCACC GACGACGCGG TGATCATCGG CCTTCGGATC
GCCGCGCCAC ACACCAATTC GCGCGGCCTC GCCCATGGCG GCCTGATCAC CGCGCTCGCC
GACAATGCGA TGGGACTAAG CTGCGGTCTC AAGCTCGGGG GCTGCGCGCG GCTCTTGACC
GCCGGGCTGT CGATCGACTT CATCGGGCCG GCCAAGGTCG GACAATGGCT GCAGATCGAG
CCCGAGGTGA TCAAGCTCGG CGGGACGCTC TGCGTCGCCC AATGCTTCAT CACCGTCGAT
GGCGAGCGCT GCGCCCGGGC CAACGGCACA TTCAGCGTGG TGAAGCCGAA GGGGTGA
 
Protein sequence
MRSNAGHVPD ESNRMTDTTS IADGIPAGFV RHTRASPLTA PWEPLYAMIT DDAVIIGLRI 
AAPHTNSRGL AHGGLITALA DNAMGLSCGL KLGGCARLLT AGLSIDFIGP AKVGQWLQIE
PEVIKLGGTL CVAQCFITVD GERCARANGT FSVVKPKG