| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1872 |
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| Symbol | |
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| ID | 4022354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2096442 |
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| End bp | 2099252 |
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| Gene Length | 2811 bp |
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| Protein Length | 936 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637962065 |
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| Product | sensor histidine kinase |
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| Protein accession | YP_569008 |
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| Protein GI | 91976349 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.291512 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.670925 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGAAACG GATTGAATTT ATCGACGCGG CTTACGATTG CGATCGTCCC GCTCGTGGTG
CTGACCGCCG CGAGCGTCGG CTATCTCGGC TATCGGAACC TCGCGACTGT TGCGATCGGG
CGCACACTGG CGGCGATCGA TACCACTGCG ACCTCGCGGG CAATCGAGCT CGCGAGCCTG
GTCAAGAACG TTCGTGCCGA CGTGACGGCT TTTCGCGCTG CCATCGGCCT CGGCGAAATG
ACAACACTCA GTCGCAATCC TTCGCTGCAG ACGACCCGCG GCTGGACGCT AGCAGAATGG
AGCGCCGGGG TCGGACAACG GCTCGCTGGC GAACTCGAAG CCAAGCCCGA TCTCCTCAAG
TACCGCCTGA TCGGATTGGC GGATGGAGGC CGCGAACTCG TTCGGGTCGA ACGTCAGCGC
AACGGCGCCG TTCGCGTCGT TCCGGACGAA GAGTTGCAGC GCGCCAGCGA GCGCGATTTA
TTTGCGCAGG CGATCAACGT TGCCGAGGGA GAGAGCATCG TCTCGCCGGT CGAACTCGAT
CAGGATCATG GCGCGACGAC AAAGCCACAT GTGCCGGTGA TCCGCGTCTC GGCGCCGGTG
TTTGGGCCGG ACGGAACGCA GTTCGGTTTG ATCGTCGCCC ATATCGATCT GCGCGCCGCC
TTCGACCGGG TGACCGGTCT CGCGCAGCAG GGGCGGGTCG TCTACGTGAT CAACAACAAC
GGCGACTATC TGCTCCATCC CGACAAGACG CGCGAGTTCG GCTTCGAACT GGGCAGGCCG
GCCCGCATCC AGGACGACTT CCCCGCTCTC GTTGAAGCGA TTGCCAAGAA CCGGGAACGA
ACGTCGATTG TCGAGGATCG CAACGGAACG CCGTTCGGCG TGGCGCTCGA ACATGCCGAT
GGCGTGGCAC TGTCGATCGT CGAGACCATC CCACAGCGGA TCATTCTCGA CGCGATCATG
ACGGCTTGGC TGAGTTCCAC CTTACTCGGC TGCGCTTTCG CGGTGCTGAT CGCGATCGGG
CTCGCGCTGG TCATGGCCCG CACCATGACC AGACCGCTGT CGCAGATGAC CGCCGCGGTC
TCGTCCTTCG CAGATGATCG GCCGATCGAC CTACCGCTCG ACACCGGCGG CGAAATCGGT
GTCCTGGCGC GTGCTTTTCA GAAAATGGCG CTCGATTCGC GTGACAAAAC CGCGGCGATC
CGCCGCGAGA AGGAGATTTT CGAGCGGATC ATGAACGCGA TGGCCGAGGC GGTCCTGCTG
ATCGACAGGA AGGGACAGGT CATCTACGAG AGTCCCGGCG CAGTGAAGCT GAGGTCGCCG
ACGCCCGGCC GCCCGGTGCG GCCCTGGGCA GAGGCGATCG ACTCCTTCCT CGAAGACGGG
GTGACGCCGC TGCCTCCGGA TCGGCGCCCA GGCCAGCGCG CTTTGCAAGG CGAAACCGTC
GACCAGATCG AACTGGTCCT GCACGTTCGC GACGCCGGCC GCAACGTCGA GGTCATCGGC
AACGCCCAGC CTATCCGGAA CGCCGCAGGC CGGATCAACG GCGCGGTCGT CGTTTACAAG
GACGTCACCG AATTGAAGGA AGCCGAGCGC CGACTGCATC AGGCGCAGAA GCTGGAGGCG
ATCGGTCAGC TCACCGGCGG CGTCGCGCAC GACTTCAACA ACATGCTGAC CGTCATCAGC
GGGACCGCAG AGATCCTGAT TGAAGAACTC ACCGACCGAC CGAACCTCAG CAACATCGCC
AAGATGATCG AACAAGCTGC AGAGCGTGGC GCCGACCTCA CGCGGCAGTT GCTCGCCTTC
GCTCGCAAAC AGCCGCTGCA GCCGCGCAAT GTCGACGTCA ACGCGATCGT TCTCGAAACC
GAGCAATTGC TGCGGGCGAC CATCGGCGAA CACATCCAGG TCGACGTCCG GCTGGAGCAG
GACGTTGATG CGGCGCGGAT CGACCCGTCG CAGCTCTCAT CGGCACTGCT CAACCTCGCG
GTGAATGCGC GCGACGCGAT GCCGATCAGC GGCAAGCTGC TGCTCGAAAC CGGCGGCGTG
GTGCTCGACA ACGACTACGC CCAGCAAAAT CCAGACGTGC GCCCCGGGCG CTACGTGATG
ATCGCGGTCA GCGACACCGG CACCGGCATT CCCGCGGAGA TGCGCGATAA GGTGTTCGAG
CCGTTCTTCA CCACGAAGAG CCTTGGCAAC GGCACCGGCC TCGGGCTCAG CATCGTGTAC
GGTTTCGTCA AACAGTCGGG CGGCCACGTC AAGATCTACA GCGAGGAAAA TCAGGGCACC
ACGATCAAGC TGTATCTTCC GCGCACCGAC GCCGACATCG ACGGCGCGCC GATCGCAGCG
CCCGTTGTGG GCGGTAGCGA GACCATCTTG CTGGTGGAGG ATGACGAACT GGTCCGCAAA
TTCGCGATCG CCCAGCTCCA GGGCCTCGGC TATCGCACCA TCGCGGTATG CGACGGTCCC
TCGGCTCTGA AAGAGGTCGA GCGCGGCGCC GCGTTCGATT TGCTGTTCAC CGACGTGATC
ATGCCCGGCG GGCTGAATGG CCCGCAACTC GCCGAAGCGG TCGCGCGGAT CAGGCCGGTC
CGGGTGCTGT TCACGTCCGG CTACACCGAG AACGCGATCT TGCATCATGG CCGGCTCGAT
CCCGGTGCGC TGCTGTTGAG CAAGCCGTAT CGCCGGTCGG ATCTGGCGCG GATGGTGCGC
GCCGCTCTCG ATCAGGAATA CTACGTTCCC GCCGAGCCGT CGGCCTGCGC GGTCGCGGCT
AAATCACCCG ACCAGCTTTG GCCCAATACG GATCGCGTAG CCGGCGCTTG A
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| Protein sequence | MRNGLNLSTR LTIAIVPLVV LTAASVGYLG YRNLATVAIG RTLAAIDTTA TSRAIELASL
VKNVRADVTA FRAAIGLGEM TTLSRNPSLQ TTRGWTLAEW SAGVGQRLAG ELEAKPDLLK
YRLIGLADGG RELVRVERQR NGAVRVVPDE ELQRASERDL FAQAINVAEG ESIVSPVELD
QDHGATTKPH VPVIRVSAPV FGPDGTQFGL IVAHIDLRAA FDRVTGLAQQ GRVVYVINNN
GDYLLHPDKT REFGFELGRP ARIQDDFPAL VEAIAKNRER TSIVEDRNGT PFGVALEHAD
GVALSIVETI PQRIILDAIM TAWLSSTLLG CAFAVLIAIG LALVMARTMT RPLSQMTAAV
SSFADDRPID LPLDTGGEIG VLARAFQKMA LDSRDKTAAI RREKEIFERI MNAMAEAVLL
IDRKGQVIYE SPGAVKLRSP TPGRPVRPWA EAIDSFLEDG VTPLPPDRRP GQRALQGETV
DQIELVLHVR DAGRNVEVIG NAQPIRNAAG RINGAVVVYK DVTELKEAER RLHQAQKLEA
IGQLTGGVAH DFNNMLTVIS GTAEILIEEL TDRPNLSNIA KMIEQAAERG ADLTRQLLAF
ARKQPLQPRN VDVNAIVLET EQLLRATIGE HIQVDVRLEQ DVDAARIDPS QLSSALLNLA
VNARDAMPIS GKLLLETGGV VLDNDYAQQN PDVRPGRYVM IAVSDTGTGI PAEMRDKVFE
PFFTTKSLGN GTGLGLSIVY GFVKQSGGHV KIYSEENQGT TIKLYLPRTD ADIDGAPIAA
PVVGGSETIL LVEDDELVRK FAIAQLQGLG YRTIAVCDGP SALKEVERGA AFDLLFTDVI
MPGGLNGPQL AEAVARIRPV RVLFTSGYTE NAILHHGRLD PGALLLSKPY RRSDLARMVR
AALDQEYYVP AEPSACAVAA KSPDQLWPNT DRVAGA
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