| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1861 |
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| Symbol | |
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| ID | 4022343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2082943 |
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| End bp | 2083764 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637962054 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_568997 |
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| Protein GI | 91976338 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0078052 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.313039 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCGTT TAGCGCGCGA CAATCAAAAA TGGAAACGCT GTATGAGCAT ATTCGATCTG
AGCGGACGCG TCGCAGTCAT CACCGGTGGC AATGGTGGCA TCGGGCTTGG TATGGCGCAG
GCGCTTGCCG CGGCGGGTTG CAACGTCTCG ATCTGGGGCC GCAATGCCGA CAAGAACAAG
GCCGCGGTGC AGAGCCTGGC TGGCGCGCCC GGCAAGTCCG AAGCGCATGT TTGCGACGTG
ACAGATCCGG CCTCGGTCAA GGCCGCAATG GACGCGACGC TGCAATCCTT CGGTCGCGTC
GACGGCTGTT TCGCCAATGC CGGAATCGGC GGCGGGGGGC GGCAGGCTTT CATCGATCGC
ACCGAGGAGC AGTGGCGCAC GATGTTCGCC ACCAATCTCG ACGGCGTGTT CCATGCCTTC
CAGGCCGCGG CGCGACACAT GACCGAACGC GCCGCCAACG GCGATCCCTT CGGCCGTCTG
GTGGCGACCT CGAGTCTCGC CTCGATCTTC GGCACTGCGC GCAACGAGCA CTACGCCGCG
ACCAAGGCTG CGATCAACGC GCTGGTGCGC GCGCTCGCGG TCGAACTCGC GCGCCACAAC
ATCACCGCCA ATGCGATCTT GCCGGGCTGG ATCAAGAGCG ACATGACCGC AGGGATCCTG
GGCAACGACA AGTTCGTGGC GAACGTCATG CCGCGCATTC CGGTGCGTCG GTTCGGCGAG
CCGGAAGATT TCGGCGGCAT CGCCGTGTAT CTGATGAGCA AGGCGTCGTC TTATCACACC
GCCGACACGT TCGTGATCGA CGGCGGATAC ACGGCGTTCT GA
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| Protein sequence | MHRLARDNQK WKRCMSIFDL SGRVAVITGG NGGIGLGMAQ ALAAAGCNVS IWGRNADKNK
AAVQSLAGAP GKSEAHVCDV TDPASVKAAM DATLQSFGRV DGCFANAGIG GGGRQAFIDR
TEEQWRTMFA TNLDGVFHAF QAAARHMTER AANGDPFGRL VATSSLASIF GTARNEHYAA
TKAAINALVR ALAVELARHN ITANAILPGW IKSDMTAGIL GNDKFVANVM PRIPVRRFGE
PEDFGGIAVY LMSKASSYHT ADTFVIDGGY TAF
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