Gene RPD_1860 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1860 
Symbol 
ID4022342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2081149 
End bp2082813 
Gene Length1665 bp 
Protein Length554 aa 
Translation table11 
GC content63% 
IMG OID637962053 
ProductFAD dependent oxidoreductase 
Protein accessionYP_568996 
Protein GI91976337 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG2072] Predicted flavoprotein involved in K+ transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.135048 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.340753 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGATGG GCGAGACTCG GACGGGCAAC GAGCCGCAAG CGCGATACGA CGTCGTCGTT 
GTCGGCGCGG GCTTTGCCGG ACTGTACTTG CTGCACAGGC TGCGCGGGCA GGGGCTTTCG
GTTCGTGTCT TCGAGCAGGG TTCGGGCGTC GGTGGCACAT GGTACTGGAA TCGCTATCCT
GGCGCGCGCT GCGACGTCGA GAGCATGCAG TACTCCTACT CGTTCTCCGA CGAGTTGCAG
CAGCAATGGG ACTGGAGCGA GCGCTACGCG CCGCAGCCCG AGATCCTGGC CTACGCCAAT
CACGTCGCCG ACCGCTTCGA TCTGCGACGC GATATCCAGT TCGACACACG CGTGGAGAGC
GCGGTGTTCG ATGAGACTGC GCGGCGATGG AGGGTGACCA CCGCGGGAGG TGAAACTTCG
ACCGCGCAAT TCGTGGTGCT CGCCACTGGT TGTCTGTCGA ACGCACGGAT GCCGAATATC
GCCGGCATCG CCGATTATGA AGGCAAAACC TATCACACCG GACATTGGCC GCACGAGCCG
ATCGACTTCA CCGGTCAGCG CGTCGGCGTG ATCGGCACAG GATCGTCGGC GATTCAGTCG
ATCCCGCTGA TTGCCGAACA GGCGAGCCAG CTCGTGGTGT TTCAGCGCAC GGCCAATTTC
TCGGTGCCGG CCCGCAATGC GCCGTTGAGG CCGGAAGAGC GCAAGCAATT TCGCGACAAC
TATCCGGAGA TCCGTCGCAT CGCGCGCGAG GAGATGCGCA ACGGCATCGT CACCGCGCCG
CCGGAGAAGG GTGCACTCGA CGAGCCCGAC GAAGCACGGC GGCGAAACTA CGAACGCCGG
TGGACGCGCG GCGGCCTGAC CTTCATGGCG GCCTACAACA ATCTCGCGTT GGAAAAGGCC
GCGAACGACA CCGCAGCCGA TTTCGTCCGC GCCAAGATCG CCGAGATCGT GAAGGACCCA
GTGGTCGCGA AGCTGCTACA GCCGGACAGT CATCCGATCG GCTCCAAGCG GATCTGCGTC
GATACTGACT ATTATGCGAC CTTCAACCGG GACAATGTCG AGCTTGTCGA CCTTCGCGCC
GACCCGATCG AGCAGATCAC GAGGCATGGC GTTCGCGCTG GCGACAAGGA GTATCCGCTC
GACGCCATCG TCTTCGCCAC CGGCTTCGAT GCTATGACCG GCTCGGTCAC GAAAATCGGC
ATTAAAGGGA GGAATGGCCG AACCCTCAAC GCAAAATGGG CGGAAGGACC GCGCACCTTT
CTCGGCCTGA TGAGCGAGGG CTTTCCCAAT CTGTTCCTGA TCACCGGCCC CGGCAGCCCA
TCGGTGCTGA GCAACATGAT CGTCTCGATC GAGCAGCATG TCGACTGGAT CGCCGATTGC
CTCGCAGACA TGCGACGGCA GGGGCTCGAC TGCATCGAGG CGACCAAGGA AGCCGAGGAT
AACTGGGTCG CTCACGTCAA CGAGGTCGCC TCTGGCACGC TGTATCCGCA GGCAAACTCC
TGGTACATGG GCGCGAATGT TCCCGGCAAG CCGCGCGTCT TCATGCCCTA TATCGGCGGC
GTCGGCGTCT ACCGCCAGAT TTGCAACGAT GTCGCGACGA GTGGCTATCA GGGATTCGCG
TTGAGCGGCG ATGCGATTAC GAAGCGCGCT GCTGCGTCAT CCTGA
 
Protein sequence
MAMGETRTGN EPQARYDVVV VGAGFAGLYL LHRLRGQGLS VRVFEQGSGV GGTWYWNRYP 
GARCDVESMQ YSYSFSDELQ QQWDWSERYA PQPEILAYAN HVADRFDLRR DIQFDTRVES
AVFDETARRW RVTTAGGETS TAQFVVLATG CLSNARMPNI AGIADYEGKT YHTGHWPHEP
IDFTGQRVGV IGTGSSAIQS IPLIAEQASQ LVVFQRTANF SVPARNAPLR PEERKQFRDN
YPEIRRIARE EMRNGIVTAP PEKGALDEPD EARRRNYERR WTRGGLTFMA AYNNLALEKA
ANDTAADFVR AKIAEIVKDP VVAKLLQPDS HPIGSKRICV DTDYYATFNR DNVELVDLRA
DPIEQITRHG VRAGDKEYPL DAIVFATGFD AMTGSVTKIG IKGRNGRTLN AKWAEGPRTF
LGLMSEGFPN LFLITGPGSP SVLSNMIVSI EQHVDWIADC LADMRRQGLD CIEATKEAED
NWVAHVNEVA SGTLYPQANS WYMGANVPGK PRVFMPYIGG VGVYRQICND VATSGYQGFA
LSGDAITKRA AASS