Gene RPD_1851 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1851 
Symbol 
ID4022333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2071150 
End bp2071854 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content64% 
IMG OID637962045 
ProductABC transporter related 
Protein accessionYP_568988 
Protein GI91976329 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0531443 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.470298 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGTCGG TGCGTGAGGT CACCACGGCC TATAAGGGCC TGGTCGCGAT TTCGCAGGTT 
TCGATCGAGG TCGAGAAGGG CGAGATCGTC TGCGTTGCCG GCGCTAACGG CGCCGGAAAG
TCGACGCTGT TGAAATCGAT TGCCGGCGCC GAGCGGCCGC GCTCCGGGCA GGTGTCGTTC
GATGGCGAGC GGATCGACGG CACGGCACAG CATCTGATCA CCGCCCGCGG CATCGCTTAT
GTGCCGGAAA ACCGAAGGCT GTTTCCGCGT TTGTCGGTGC ACGACAATCT GCGGCTCGGC
AGCTATCTGT TCCGCGGCAA GGTGGATCGC GAGCAACCCC TGGAACTGGT GTTCAGCCTG
TTTCCGCGGC TGAAGGAGCG GCTCGAGCAG CGCGCCGAGA CGCTGTCGGG CGGCGAGCAG
CAGATGCTGG CGATCGGGCG GGCACTGATG ACGCGGCCGC GGCTGCTGAT GCTGGACGAG
CCGTCGCAGG GCATCATGCC GAAGCTCGTC AGCGAGATCT TCCAGGCGGT GAAGAAGATC
CGCGACGCCG GCATGACGGT TCTGATCGTC GAGCAGCGCA TGGCCGAATG CCTCGAGATC
GCCGACCGCG CCTACATCCT GCAGACGGGC AGGGTGCTGA TGCAGGGCAA GTCCGCCGAG
TTGATGGACA ACCCGGACGT TCGCAAGGCG TATCTGGGAT TGTAA
 
Protein sequence
MLSVREVTTA YKGLVAISQV SIEVEKGEIV CVAGANGAGK STLLKSIAGA ERPRSGQVSF 
DGERIDGTAQ HLITARGIAY VPENRRLFPR LSVHDNLRLG SYLFRGKVDR EQPLELVFSL
FPRLKERLEQ RAETLSGGEQ QMLAIGRALM TRPRLLMLDE PSQGIMPKLV SEIFQAVKKI
RDAGMTVLIV EQRMAECLEI ADRAYILQTG RVLMQGKSAE LMDNPDVRKA YLGL