| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1823 |
|---|
| Symbol | |
|---|
| ID | 4022305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2042156 |
|---|
| End bp | 2042824 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637962017 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_568960 |
|---|
| Protein GI | 91976301 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.331222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGCA CGCGTGCGAA CGATTACGAT CAGAAACGCC TCGGCATCCT CAGCCGTTCC
GCAAAGCTGT TCGCCGAGCA CGGCTACACC GGAACCTCGA TCACCATGAT CGCGGAGGCC
TGCGGCGTCT CCAAGGCGCT GATGTATCAC TACTACCGCT CCAAGGACGC GGTGCTGTTC
GATCTGCTCG CCGACCATCT GCAACATCTC GTCGGCGTGG TCGAAGCCGC CGCGCATTCA
GATGGCGACG CAAACGAGCG GCTGTTCGCG ATCGCGGCGG CATTGCTCGA GGCCTATCGC
GGCGCCGACG CCGAACATCA GGTGCAGATC TCCAGCCTCA AGCTGCTGCC GCCCGAGCAG
CAGGAAGAGT TGAAGGCGCT GGAGCGCAAG CTCGTCAGCC TGATGTCGGA TGCGATCAGC
GCGGCGATCC CCGCCGCGAC GGCCAGGCCG CATCTGTTGA AGCCGCTGAC GATGTCGCTG
TTCGGCATGC TGAATTGGCA CTATCTCTGG TTCCGCGAAG GCAAGGGCCT GTCGCGCGAG
ACCTATGCCA GGATGGTGAC GACCCTGATG GTCGCCGGCG CCGAGCAGGC GATGGACGCG
ACCGAGGGCG ACGCCAAAAC CGCGCGCAAG AAGACCGCGC GCCCGGCGGC CGTGGCGCGA
CGGGCTTAG
|
|---|
| Protein sequence | MARTRANDYD QKRLGILSRS AKLFAEHGYT GTSITMIAEA CGVSKALMYH YYRSKDAVLF
DLLADHLQHL VGVVEAAAHS DGDANERLFA IAAALLEAYR GADAEHQVQI SSLKLLPPEQ
QEELKALERK LVSLMSDAIS AAIPAATARP HLLKPLTMSL FGMLNWHYLW FREGKGLSRE
TYARMVTTLM VAGAEQAMDA TEGDAKTARK KTARPAAVAR RA
|
|---|
| |