Gene RPD_1810 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1810 
Symbol 
ID4022292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2024981 
End bp2028085 
Gene Length3105 bp 
Protein Length1034 aa 
Translation table11 
GC content64% 
IMG OID637962004 
Productacriflavin resistance protein 
Protein accessionYP_568947 
Protein GI91976288 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCTCA CCGATATCTT CATCAAGCGG CCTGTGCTGT CGGTCGTCGT CAGCATGCTG 
ATTTTGCTGA TCGGCTTTCG GGCCGCGACC ACGCTGCCGA TCCGCCAGTA TCCCAAGCTG
TCGAACACCG TGGTCACGAT CACCACGGCG TATCCCGGCG CGTCGCCGGA CCTGATGCAG
GGCTTCATCA CCACGCCGAT CGAGCAGGCG GTGGCCTCCG CCGAGGGCGT CGACTACATC
ACCTCGTCCT CGACCCAGGG CCAGAGCCTG ATCACGGTCT ACATCAAGCT CAACTTCGAT
CCGAACCAGG CGCTGACCGA GGTGCTCGCC AAGGTCAATT CGGTCAAATA TCTGATCCCG
AAGGAAGCCA ACGACCCGGT GATCGTCAAA TCGACCGGTC AGACCACGGC GGTGATGTAT
ATCGGCTTCT CGAGTACCGA GCTGTCGGGG TCGGCCATCT CGGACTATCT GACCCGCGTG
GTGCAGCCGG TCCTGTCCAC CGTCGAAGGT GTCGCCTCCG CCGATATTCT CGGCGGCCAG
ACCTTTGCCA TGCGCGTCTG GCTCGATCCG CTGAAGATGG CCGGCCGCAA CGTGTCGCCC
GACGACGTCG CCGCCGCGAT TCGCGCCAAC AACTTCCAGG CCGCCGCGGG CCAGACCAAA
GGCTATTTCA CGGTCTCCAA CGTCAGCACC AACGCCGACC TGCAGAATGT CGAGCAGTTC
AAGCGGATGA CGGTGAAGGC CAAGGACGGC GGCTTCGTCC GATTGCAGGA CGTCGCCACG
GTTGAGCTGG CCGCGCAGAG CACCGATTCG AGCGTCGCCC TGTCCGGCGA CCGCGCGATC
TTCATCGGCG TCCAGGCGAC GCCGCAAGGC AACCCTCTGA ACATCGTCAG CGGCGTGCGC
AAGCTGTTCC CCGAGATCGA GCGCAACCTG CCGCCGTCGC TGAAGATGAA GGTCGCCTAC
GATTCCACAG GATTCATCCG CTCCTCGATC ACCGAGGTTG AAAAGACCCT GATCGAAGCG
GTGGCGATCG TCATCGTGGT GATCTTCCTG TTCCTCGCCT CGTTCCGATC GGTGATCATC
CCGGTGGTGA CGATCCCGTT GTCGCTGATC GGCGTCTGTA CGGCGATGCT GGCGATGGGC
TTCAGTATCA ACCTGTTGAC GCTGCTGGCG ATGGTGCTCG CGATCGGCCT CGTGGTCGAC
GACGCCATCG TCGTGGTGGA GAACATCCAT CGACATCTCG AAGAGGGGAA GAGTCCCGTC
CAGGCCTCGC TGATCGGCGC CCGCGAAATC GTCGGGCCGG TGATCTCGAT GACGATCACG
CTGGCCGCGG TGTACGCGCC GATCGGTTTC CTCGGCGGTC TCACCGGCGC GCTGTTCCGC
GAGTTCGCCT TCACGCTCGC CGGCGCGGTG ATCGTGTCCG GCGTTGTTGC GCTGACGCTG
TCGCCGATGA TGTGCTCGGT GCTGTTGAAG CATCAGGCGA ACCAGAGCTG GTTCGCCCGC
AAGGTCGATC AGGTGTTCGG CGCCACCACG CGCTGGTACG GACGCCAGCT CGATCGTTCG
CTCGACTACC GGCCGATCAC CGCGATGTTC GCCGTGGTGA TCCTCGGGCT GGTCGGGTTC
ATGTACATGA ACACGGCGAA GGAGCTTGCC CCCGAGGAAG ATCAGGGCAT CGTGTTTGCG
GTGACCAAGG CGCCGAAATA CGCCAATATC GACTATTCCG ATTTCTACGG CGACAAGCTC
GACAAGGCGT TCGCGAAGTT TCCGGAGACC GACCTTCGCT TCATTCTGAA CGGCACCGCC
GGCCCGAACA ACGGCGTCGC CGGTATGTTG CTGAAGCCGT GGGACGAGCG CACGCGCTCG
TCGCTCAAGC TCAAGCCGTT GGTGCAGGCC GAACTCAGCA AGATCGAGGG CGTCAACGCC
TTCGCCTTCA ACCTGCCGTC TCTGCCCGGC GGCCCGGGCG GCCTGCCGAT CCAGATGGTG
ATCAACTCCA CCACCGGCTT CCGCGCGGTC TATGAGGAGA TGGTCAAGCT GAAGGACGCC
GCGCGCAAGA GCGGCCTGTT CATCGTCTCC GACAGCGACC TCGACTTCAA CCAGCCGGTG
GTGCGGGTGA AGATCGACCG CAACAAGGCC AACGATCTCG GCATCACGAT GGCCCAGATC
GGCAGCTCGC TGGCGACGCT GCTCGGCGGC AACTACACCA ATCGATTCAA CCTCGAAGGC
CGGTCGTATC AGGTGATCCC GCAGGTGCCG CGCGCACTGC GGCTGTCGCC GAACTCGCTC
GACGGCTACT ACGTGCCGAG TTCGACCGGG CAGCAGGTGC CGCTGTCGAC GCTGGTGTCG
ATCGAGACCG GCACCGATCC GAACGCGCTG ACGCATTTCA ACCAGCTGAA TTCCGCCACC
TTCCAGGCGG TGCCGATGCC GGGCGTGACG GTCGGGCAGG CGGTCGACTT CCTCGAGCAG
CAGTCCAAGA ACCTGCCGTC CGGCTTCAGC CACAGTTATC TCGCCGATGC GCGGCAATAT
GTGCAGGAGG GCAACCAGCT CGCCATCACC TTCGGATTCG CGCTGATCAT CATCTTCCTG
GTGCTGGCCG CTCAGTTCGA AAGTTTGCGC GATCCGCTGG TGATAATGAT CTCGGTGCCG
ATGGCGGTTT CGGGCGCGTT GATCCCGTTG TTCTTCGGCG TCGCGACGAT CAACATCTAC
ACCCAGGTAG GGTTGCTGAC GCTGGTCGGC CTGATCAGTA AGCACGGCAT TCTGATGGTC
GAGTTCGCCC GCGAGTTGCA GCTCAAGGAA GGGCTCGACA AGCGCTCGGC GATCGAGATG
TCGGCGCGGG TCCGGCTGCG GCCGATCCTG ATGACCACCG CGGCGATGGT CACCGGCCTG
CTGCCGCTGC TCACCGCCTC GGGCGCGGGC GCCGCGAGCC GGTTCTCGAT CGGCCTCGTC
GTGGTGTCCG GCATGTTGAT CGGCACGCTG TTCACGCTGT TCGTGCTGCC GGCGGTCTAT
GTCGCGATCG GAACCGACCA CCGCGCGGCG TCGGAATCCG AGCGCGCCAA GCAGATCGAG
GACTACGAGA TGGAGCATTC CTCGCCGTCG CTGAAGCCGA CCTGA
 
Protein sequence
MALTDIFIKR PVLSVVVSML ILLIGFRAAT TLPIRQYPKL SNTVVTITTA YPGASPDLMQ 
GFITTPIEQA VASAEGVDYI TSSSTQGQSL ITVYIKLNFD PNQALTEVLA KVNSVKYLIP
KEANDPVIVK STGQTTAVMY IGFSSTELSG SAISDYLTRV VQPVLSTVEG VASADILGGQ
TFAMRVWLDP LKMAGRNVSP DDVAAAIRAN NFQAAAGQTK GYFTVSNVST NADLQNVEQF
KRMTVKAKDG GFVRLQDVAT VELAAQSTDS SVALSGDRAI FIGVQATPQG NPLNIVSGVR
KLFPEIERNL PPSLKMKVAY DSTGFIRSSI TEVEKTLIEA VAIVIVVIFL FLASFRSVII
PVVTIPLSLI GVCTAMLAMG FSINLLTLLA MVLAIGLVVD DAIVVVENIH RHLEEGKSPV
QASLIGAREI VGPVISMTIT LAAVYAPIGF LGGLTGALFR EFAFTLAGAV IVSGVVALTL
SPMMCSVLLK HQANQSWFAR KVDQVFGATT RWYGRQLDRS LDYRPITAMF AVVILGLVGF
MYMNTAKELA PEEDQGIVFA VTKAPKYANI DYSDFYGDKL DKAFAKFPET DLRFILNGTA
GPNNGVAGML LKPWDERTRS SLKLKPLVQA ELSKIEGVNA FAFNLPSLPG GPGGLPIQMV
INSTTGFRAV YEEMVKLKDA ARKSGLFIVS DSDLDFNQPV VRVKIDRNKA NDLGITMAQI
GSSLATLLGG NYTNRFNLEG RSYQVIPQVP RALRLSPNSL DGYYVPSSTG QQVPLSTLVS
IETGTDPNAL THFNQLNSAT FQAVPMPGVT VGQAVDFLEQ QSKNLPSGFS HSYLADARQY
VQEGNQLAIT FGFALIIIFL VLAAQFESLR DPLVIMISVP MAVSGALIPL FFGVATINIY
TQVGLLTLVG LISKHGILMV EFARELQLKE GLDKRSAIEM SARVRLRPIL MTTAAMVTGL
LPLLTASGAG AASRFSIGLV VVSGMLIGTL FTLFVLPAVY VAIGTDHRAA SESERAKQIE
DYEMEHSSPS LKPT