Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_1810 |
Symbol | |
ID | 4022292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 2024981 |
End bp | 2028085 |
Gene Length | 3105 bp |
Protein Length | 1034 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637962004 |
Product | acriflavin resistance protein |
Protein accession | YP_568947 |
Protein GI | 91976288 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCTCA CCGATATCTT CATCAAGCGG CCTGTGCTGT CGGTCGTCGT CAGCATGCTG ATTTTGCTGA TCGGCTTTCG GGCCGCGACC ACGCTGCCGA TCCGCCAGTA TCCCAAGCTG TCGAACACCG TGGTCACGAT CACCACGGCG TATCCCGGCG CGTCGCCGGA CCTGATGCAG GGCTTCATCA CCACGCCGAT CGAGCAGGCG GTGGCCTCCG CCGAGGGCGT CGACTACATC ACCTCGTCCT CGACCCAGGG CCAGAGCCTG ATCACGGTCT ACATCAAGCT CAACTTCGAT CCGAACCAGG CGCTGACCGA GGTGCTCGCC AAGGTCAATT CGGTCAAATA TCTGATCCCG AAGGAAGCCA ACGACCCGGT GATCGTCAAA TCGACCGGTC AGACCACGGC GGTGATGTAT ATCGGCTTCT CGAGTACCGA GCTGTCGGGG TCGGCCATCT CGGACTATCT GACCCGCGTG GTGCAGCCGG TCCTGTCCAC CGTCGAAGGT GTCGCCTCCG CCGATATTCT CGGCGGCCAG ACCTTTGCCA TGCGCGTCTG GCTCGATCCG CTGAAGATGG CCGGCCGCAA CGTGTCGCCC GACGACGTCG CCGCCGCGAT TCGCGCCAAC AACTTCCAGG CCGCCGCGGG CCAGACCAAA GGCTATTTCA CGGTCTCCAA CGTCAGCACC AACGCCGACC TGCAGAATGT CGAGCAGTTC AAGCGGATGA CGGTGAAGGC CAAGGACGGC GGCTTCGTCC GATTGCAGGA CGTCGCCACG GTTGAGCTGG CCGCGCAGAG CACCGATTCG AGCGTCGCCC TGTCCGGCGA CCGCGCGATC TTCATCGGCG TCCAGGCGAC GCCGCAAGGC AACCCTCTGA ACATCGTCAG CGGCGTGCGC AAGCTGTTCC CCGAGATCGA GCGCAACCTG CCGCCGTCGC TGAAGATGAA GGTCGCCTAC GATTCCACAG GATTCATCCG CTCCTCGATC ACCGAGGTTG AAAAGACCCT GATCGAAGCG GTGGCGATCG TCATCGTGGT GATCTTCCTG TTCCTCGCCT CGTTCCGATC GGTGATCATC CCGGTGGTGA CGATCCCGTT GTCGCTGATC GGCGTCTGTA CGGCGATGCT GGCGATGGGC TTCAGTATCA ACCTGTTGAC GCTGCTGGCG ATGGTGCTCG CGATCGGCCT CGTGGTCGAC GACGCCATCG TCGTGGTGGA GAACATCCAT CGACATCTCG AAGAGGGGAA GAGTCCCGTC CAGGCCTCGC TGATCGGCGC CCGCGAAATC GTCGGGCCGG TGATCTCGAT GACGATCACG CTGGCCGCGG TGTACGCGCC GATCGGTTTC CTCGGCGGTC TCACCGGCGC GCTGTTCCGC GAGTTCGCCT TCACGCTCGC CGGCGCGGTG ATCGTGTCCG GCGTTGTTGC GCTGACGCTG TCGCCGATGA TGTGCTCGGT GCTGTTGAAG CATCAGGCGA ACCAGAGCTG GTTCGCCCGC AAGGTCGATC AGGTGTTCGG CGCCACCACG CGCTGGTACG GACGCCAGCT CGATCGTTCG CTCGACTACC GGCCGATCAC CGCGATGTTC GCCGTGGTGA TCCTCGGGCT GGTCGGGTTC ATGTACATGA ACACGGCGAA GGAGCTTGCC CCCGAGGAAG ATCAGGGCAT CGTGTTTGCG GTGACCAAGG CGCCGAAATA CGCCAATATC GACTATTCCG ATTTCTACGG CGACAAGCTC GACAAGGCGT TCGCGAAGTT TCCGGAGACC GACCTTCGCT TCATTCTGAA CGGCACCGCC GGCCCGAACA ACGGCGTCGC CGGTATGTTG CTGAAGCCGT GGGACGAGCG CACGCGCTCG TCGCTCAAGC TCAAGCCGTT GGTGCAGGCC GAACTCAGCA AGATCGAGGG CGTCAACGCC TTCGCCTTCA ACCTGCCGTC TCTGCCCGGC GGCCCGGGCG GCCTGCCGAT CCAGATGGTG ATCAACTCCA CCACCGGCTT CCGCGCGGTC TATGAGGAGA TGGTCAAGCT GAAGGACGCC GCGCGCAAGA GCGGCCTGTT CATCGTCTCC GACAGCGACC TCGACTTCAA CCAGCCGGTG GTGCGGGTGA AGATCGACCG CAACAAGGCC AACGATCTCG GCATCACGAT GGCCCAGATC GGCAGCTCGC TGGCGACGCT GCTCGGCGGC AACTACACCA ATCGATTCAA CCTCGAAGGC CGGTCGTATC AGGTGATCCC GCAGGTGCCG CGCGCACTGC GGCTGTCGCC GAACTCGCTC GACGGCTACT ACGTGCCGAG TTCGACCGGG CAGCAGGTGC CGCTGTCGAC GCTGGTGTCG ATCGAGACCG GCACCGATCC GAACGCGCTG ACGCATTTCA ACCAGCTGAA TTCCGCCACC TTCCAGGCGG TGCCGATGCC GGGCGTGACG GTCGGGCAGG CGGTCGACTT CCTCGAGCAG CAGTCCAAGA ACCTGCCGTC CGGCTTCAGC CACAGTTATC TCGCCGATGC GCGGCAATAT GTGCAGGAGG GCAACCAGCT CGCCATCACC TTCGGATTCG CGCTGATCAT CATCTTCCTG GTGCTGGCCG CTCAGTTCGA AAGTTTGCGC GATCCGCTGG TGATAATGAT CTCGGTGCCG ATGGCGGTTT CGGGCGCGTT GATCCCGTTG TTCTTCGGCG TCGCGACGAT CAACATCTAC ACCCAGGTAG GGTTGCTGAC GCTGGTCGGC CTGATCAGTA AGCACGGCAT TCTGATGGTC GAGTTCGCCC GCGAGTTGCA GCTCAAGGAA GGGCTCGACA AGCGCTCGGC GATCGAGATG TCGGCGCGGG TCCGGCTGCG GCCGATCCTG ATGACCACCG CGGCGATGGT CACCGGCCTG CTGCCGCTGC TCACCGCCTC GGGCGCGGGC GCCGCGAGCC GGTTCTCGAT CGGCCTCGTC GTGGTGTCCG GCATGTTGAT CGGCACGCTG TTCACGCTGT TCGTGCTGCC GGCGGTCTAT GTCGCGATCG GAACCGACCA CCGCGCGGCG TCGGAATCCG AGCGCGCCAA GCAGATCGAG GACTACGAGA TGGAGCATTC CTCGCCGTCG CTGAAGCCGA CCTGA
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Protein sequence | MALTDIFIKR PVLSVVVSML ILLIGFRAAT TLPIRQYPKL SNTVVTITTA YPGASPDLMQ GFITTPIEQA VASAEGVDYI TSSSTQGQSL ITVYIKLNFD PNQALTEVLA KVNSVKYLIP KEANDPVIVK STGQTTAVMY IGFSSTELSG SAISDYLTRV VQPVLSTVEG VASADILGGQ TFAMRVWLDP LKMAGRNVSP DDVAAAIRAN NFQAAAGQTK GYFTVSNVST NADLQNVEQF KRMTVKAKDG GFVRLQDVAT VELAAQSTDS SVALSGDRAI FIGVQATPQG NPLNIVSGVR KLFPEIERNL PPSLKMKVAY DSTGFIRSSI TEVEKTLIEA VAIVIVVIFL FLASFRSVII PVVTIPLSLI GVCTAMLAMG FSINLLTLLA MVLAIGLVVD DAIVVVENIH RHLEEGKSPV QASLIGAREI VGPVISMTIT LAAVYAPIGF LGGLTGALFR EFAFTLAGAV IVSGVVALTL SPMMCSVLLK HQANQSWFAR KVDQVFGATT RWYGRQLDRS LDYRPITAMF AVVILGLVGF MYMNTAKELA PEEDQGIVFA VTKAPKYANI DYSDFYGDKL DKAFAKFPET DLRFILNGTA GPNNGVAGML LKPWDERTRS SLKLKPLVQA ELSKIEGVNA FAFNLPSLPG GPGGLPIQMV INSTTGFRAV YEEMVKLKDA ARKSGLFIVS DSDLDFNQPV VRVKIDRNKA NDLGITMAQI GSSLATLLGG NYTNRFNLEG RSYQVIPQVP RALRLSPNSL DGYYVPSSTG QQVPLSTLVS IETGTDPNAL THFNQLNSAT FQAVPMPGVT VGQAVDFLEQ QSKNLPSGFS HSYLADARQY VQEGNQLAIT FGFALIIIFL VLAAQFESLR DPLVIMISVP MAVSGALIPL FFGVATINIY TQVGLLTLVG LISKHGILMV EFARELQLKE GLDKRSAIEM SARVRLRPIL MTTAAMVTGL LPLLTASGAG AASRFSIGLV VVSGMLIGTL FTLFVLPAVY VAIGTDHRAA SESERAKQIE DYEMEHSSPS LKPT
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