Gene RPD_1793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1793 
Symbol 
ID4022275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2006306 
End bp2007247 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content66% 
IMG OID637961987 
ProductABC transporter related 
Protein accessionYP_568930 
Protein GI91976271 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000132087 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.412838 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACG CATTGGCGGC CCACGACATC GCCATCGACG TCAAGGGGCT GACGAAATCC 
TTCAACGGCC GTGAGGTGGT GCACGACCTG TCGATGCAGG TGAAGCGCGG CTCGATCTAC
GGCTTTCTCG GGCCGAACGG CTCCGGCAAG ACCACGACGA TCCGGATGCT GTGCGGCCTG
CTGACGCCGG ACAGCGGCGA GGGCACCTGC CTCGGCTACG ACATCAGGCG CGATGCCGAC
AAGATCAAGC GTCAGGTCGG CTACATGACC CAGCGCTTCA GCCTCTATCA GGATCTTTCG
GTGCGCGAGA ATCTCGAGTT CGTGGCAAGA CTCTACGGCG TGCCCGACGC CCGCAATGCC
GCGCGCGCGA TGATCAAGCG GCTCGGCCTG TCCGGCCGCG AGGAGCAACT CGCCGGCGAA
TTGTCGGGCG GCTGGAAGCA GCGGCTGGCG CTCGGCGCCT GTACGCTGCC GAATCCGCAA
TTGCTGCTGC TCGACGAGCC GACCGCAGGC GTCGACCCCA AGGCGCGTCG CGACTTCTGG
AACGAGATCC ACGGCCTCGC CGCCGAAGGG CTCACCGTGC TGGTCTCGAC CCACTACATG
GACGAGGCCG AGCGCTGTCA CGAGATCGCC TACATCGCCT ACGGCGCTCT GCTCGCGCAC
GGCACCGTCG ACGAAGTGAT CGCCAAATCC GCGTTGGCGA CCTGGGTCGT CACCGGCGAG
GGTTTGAACG CGCTGCCCCA CGAACTCGCC GGAAAGCCGG GCGTCGATAT GGTGGCGCCG
TTCGGCACCA GCCTGCACAT TTCCGGCCGC GATCACGCCG CACTCGAAGC CAGTATCGCG
CCATATCGCG GCCAACCCGG CCAGCACTGG CAGCACGGCG CGCCGTCGCT GGAGGATGTG
TTCATCGAAC TGATGAGCCG CACCAAGGAC AATTTCCAAT GA
 
Protein sequence
MTDALAAHDI AIDVKGLTKS FNGREVVHDL SMQVKRGSIY GFLGPNGSGK TTTIRMLCGL 
LTPDSGEGTC LGYDIRRDAD KIKRQVGYMT QRFSLYQDLS VRENLEFVAR LYGVPDARNA
ARAMIKRLGL SGREEQLAGE LSGGWKQRLA LGACTLPNPQ LLLLDEPTAG VDPKARRDFW
NEIHGLAAEG LTVLVSTHYM DEAERCHEIA YIAYGALLAH GTVDEVIAKS ALATWVVTGE
GLNALPHELA GKPGVDMVAP FGTSLHISGR DHAALEASIA PYRGQPGQHW QHGAPSLEDV
FIELMSRTKD NFQ