| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1792 |
|---|
| Symbol | |
|---|
| ID | 4022274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2005509 |
|---|
| End bp | 2006309 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637961986 |
|---|
| Product | putative efflux protein |
|---|
| Protein accession | YP_568929 |
|---|
| Protein GI | 91976270 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000336857 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.255323 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGC GCCCGATCCA AGCCGCTCTT GCACTATCCA TGCTGGTTGC GTTCGCCGGC
TGCTCGAACA CCACCGATCC CGGCTATCAG GGCTGGGTCG AGGCCGACCT GATCTTCGTC
AGCCCTGACG AATCCGGCCG CGTCACCAAG CTGACCGTCC GCGAGGGCGA CGAGACCCGC
AAGGGCGACC TGATCTACAC GCTGGACGAC GATCTGCAGC AAGCCGATCT CAACCAGAAC
AACGCGACGC TGGCCAACGC CCGGCAGAGC TTCGACCGCG CGCAATCGCT CTCGAAGACC
GGCTCCGGCA CCCAGGCCAA TCTCGATGCC GCGGTGTCGG CGTTGCGCGT CGCCGAAGCC
CGGGTCGAGA CATCGAAGAC CCGGCTGATG CGCCGTGAAA TCCGCGCGCC GGTCACCGGC
ACCGTGCAGC AGATCTATTT CCGCGAGGGC GAGATGGCCG CGGCGCAGAA GCCGGTGCTG
TCGATCCTGC CGCCCGGCAA CATGAAGCTG CGCTTCTTCG TGCCGGAAGC GGCGTTGCCG
AAGCTTTCGA TCGGCGACGA GATCCGCGTG ACCTGCGACA ATTGCGCGCC GGATCTCACC
GCGAGGATCT ACTACATCGC GACCACGGCG GAATACACGC CGCCGGTGAT CTACAGCCTC
GATGAGCGCA ACAAGCTGGT CTATCTGATC CAGGCGCGAC CGGACCGTCC GACCAGCCTG
CGCGTCGGCC AGCCGATCAA CGTCTATGTC AAGCCGAAGA GTCCGGCGCA GCCGCCGGCC
GCGGCAGGCG GCAAGTCATG A
|
|---|
| Protein sequence | MIARPIQAAL ALSMLVAFAG CSNTTDPGYQ GWVEADLIFV SPDESGRVTK LTVREGDETR
KGDLIYTLDD DLQQADLNQN NATLANARQS FDRAQSLSKT GSGTQANLDA AVSALRVAEA
RVETSKTRLM RREIRAPVTG TVQQIYFREG EMAAAQKPVL SILPPGNMKL RFFVPEAALP
KLSIGDEIRV TCDNCAPDLT ARIYYIATTA EYTPPVIYSL DERNKLVYLI QARPDRPTSL
RVGQPINVYV KPKSPAQPPA AAGGKS
|
|---|
| |