Gene RPD_1762 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1762 
Symbol 
ID4022244 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1977887 
End bp1979182 
Gene Length1296 bp 
Protein Length431 aa 
Translation table11 
GC content62% 
IMG OID637961956 
Productbeta-lactamase 
Protein accessionYP_568899 
Protein GI91976240 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.178293 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.700473 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGTTGC GTCGCGCCGC GCGAACGCTG TTTGCAGGAG CGCTGATCGC GCTGGCCGTC 
AGTCAAGCGC CAAACTCCGC TCTCGCTGAA GGTACGTTCG ACCTGCCGTC CGGCGCGCAA
TTCTCGCCAA GCAAGCTCGA ACGCATCGAC GCGTTCTTCA AGACCATCAT CGCCGAAGGC
AAGATCCCCG GCGCGTTGGT GTATATCGAG CAGCGCGGCA AGCCGATCTA TCATAAGCAT
TTCGGCGTGC GCGACGTCGC CACGCAAGCG CCGGTGACGG ACGACACCAT CTTCCGGCTG
GCGTCGCTGA CGAAGCCGTT CACCTCATTC GCGGTGATGA TGCTGGTCGA CGACGGCAAG
CTGAAGCTCG ACGATCCGGT GTCGAAATAC ATTCCGGCGT TCGCCGACGT CAAAGTCGGT
GTCGAGAAGA AGCGTGACGA CGGCGAGAAG TATCTCGACT TCGAGCCGGT GAAGCGGCCG
ATCAAGGTCA GTGATCTGCT GCTGCACACA TCCGGCATCA CTTACGGTTT CTACGGCGAC
ACTCTGGTGC GCAAGGCGAT CGCGGCCGCC AAGATCTACG ACGGCGATCC GAGCAACGCC
GAATTCGCCG AGCGGATCGC CAAGCTGCCG CTGCAGGAGC AGCCCGGCAC GCTGTGGGAC
TACGGCAATT CCTACGAGGT GCTCAGCCGC GTCGTCGAGG TGGCGTCCGG CAAGTCGTTT
TATACGTATC AGAAGGAAAG ATTGTTCGAC CCGCTCGGCA TGAAGGACAC GCGCTACTAT
CTGTCCACGG ACGAACAGAA GGCGCGGATG GCGCAGCCGA TGCCGAACGA CGCCGACTTC
CGCGTCGGGC GCCCGAGCCG GCCGGACATC GTCAAGAAAT GGGAATCCGG CGGCGGCGGC
CTGACCTCGA CGCCGTCCGA CGTCATCCGC TTCGTGCGGA TGCTGCTTCA CAAGGGCGAA
CTCGACGGCA AGCGCTATTT GAGCGAAGCC GGTTTCAAGG AGATGACCAC CGATCAGATC
GGGCCCGGCT CCGGCATCGC GCGTGATCAC TTCTATTTCC CCGGCGACGG TTTCGGCTAC
GGCTACGGCC TCGGCGTCCG CACCGATCCC GGCAATGCCA AGCCGCCGCC GCCCGGCTCA
ATCGGCGAAT TGAAATGGGA CGGCGCCAGC GGTTGTTACT TCGTGGTCGA TCCGAAGCAG
GAGATGTTCT TCGTGCTGAT GGAGCAGACC CCGTCACAGC GCCAGCCGAT CCAGCGCGAA
CTCAAGAAGC TGGTCTACGA GGCGATGGAA AACTGA
 
Protein sequence
MMLRRAARTL FAGALIALAV SQAPNSALAE GTFDLPSGAQ FSPSKLERID AFFKTIIAEG 
KIPGALVYIE QRGKPIYHKH FGVRDVATQA PVTDDTIFRL ASLTKPFTSF AVMMLVDDGK
LKLDDPVSKY IPAFADVKVG VEKKRDDGEK YLDFEPVKRP IKVSDLLLHT SGITYGFYGD
TLVRKAIAAA KIYDGDPSNA EFAERIAKLP LQEQPGTLWD YGNSYEVLSR VVEVASGKSF
YTYQKERLFD PLGMKDTRYY LSTDEQKARM AQPMPNDADF RVGRPSRPDI VKKWESGGGG
LTSTPSDVIR FVRMLLHKGE LDGKRYLSEA GFKEMTTDQI GPGSGIARDH FYFPGDGFGY
GYGLGVRTDP GNAKPPPPGS IGELKWDGAS GCYFVVDPKQ EMFFVLMEQT PSQRQPIQRE
LKKLVYEAME N