| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1731 |
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| Symbol | |
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| ID | 4022211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 1941809 |
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| End bp | 1944703 |
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| Gene Length | 2895 bp |
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| Protein Length | 964 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637961925 |
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| Product | glycine dehydrogenase |
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| Protein accession | YP_568868 |
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| Protein GI | 91976209 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
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| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0573168 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAATC GCCGACCGAT CGACGCCGCC AACAACTTCG TGCGACGCCA TATCGGCCCG
TCGCCGCAGG ACATCGCGCA GATGCTGAGG ACCGTGGGAG CAGGCAGCAT CGACCAGTTG
ATGGCCGAAA CGCTGCCTTA TGCGATCCGC ATCAAAGAGC CTCTGTCGCT CGGCGCGCCG
CTGTCGGAGA CCGAGGCGCT GGCGCACATG ACAGAACTCG CAGCGAAGAA CGCGGTGTTC
ACCTCGCTGA TCGGCCAAGG CTACTCCGGC ACGATCCTGC CGACCGTGAT CCAGCGCAAT
ATTCTGGAAA ATCCCGCCTG GTACACGGCC TATACGCCGT ATCAGCCCGA GATCAGCCAA
GGCCGGCTGG AAGCGCTGTT CAACTTCCAG ACCATGATCT GCGACCTGAC CGGGCTCGAC
CTCGCCAACG CCTCGCTGCT CGACGAGGCG ACCGCGGCGG CGGAAGCGAT GGCGCTGGCG
GAACGCGCCG CGCAAAAGAA GACCAAGGCG TTCTTCGTCG ATCGCGACAC CCATCCGCAG
ACGCTGGCGG TGCTGCGCAC CCGCGCCGAA CCACTCGGCT GGTCGATCAT CGTCGGCGAT
CCGGACACCG AGCTCGAAGC CGCGGACGTG TTCGGTGCTT TGCTGCAATA TCCCGGCTCG
TCCGGCGCTC TGCGCGACCC GCGCCCGGCG ATCGCGACGC TGCACAACAA GGGCGCGCTC
GCGGTGATCG CCGCGGATCT GCTGGCGCTG ACGCTGATCA CGTCGCCCGG CGAACTCGGC
GCCGATATCG CGATCGGCTC GGCGCAACGC TTCGGCGTGC CGATGGGCTA TGGCGGCCCG
CATGCCGGCT ACATGGCCGC GCGCGACAGC CTCAAGCGTT CGCTCCCCGG CCGCATCGTC
GGCCTGTCGA TCGATTCGCA CGGCCAGCCG GCCTATCGGC TGGCGATGCA GACCCGCGAG
CAGCACATCC GCCGCGAGAA GGCGACCTCG AACATCTGCA CCGCGCAGGT GCTGCTGGCG
GTGATTGCCG CGATGTATGC GGTGTATCAC GGCCCGGACG GCCTCGCCGC GATTGCCCGC
CGGGTGCATC GCCGCACCGC GACGCTGGCG AGCGGGCTGA AGCAGCTCGG CTTTGCGCCC
ATCAACGACG CCTATTTCGA TACGCTGACG GTCGAGGTCG GCGACAAGCG CGACGCCATC
GTCGCGCGCG CCGAGGCCGA ACAGATCAAT CTGCGGATCG GCGCGACCTC GCTCGGCATC
TCGCTCGATG AAACCACCAC CCCCGCGATC GTCGAGGCGC TATGGCGCGC GTTCGACGGA
TCGCTCGACT ACGCAAGCGT CGAGCGCGAC GCGACCGACA CGCTGCCGGC GGCGCTGACG
CGGACGAGCG ACTACCTGAC GCAACCGGCG TTCCAGGACT ATCGCTCGGA GACCGAATTG
CTCCGCTACA TGCGCAAGCT GTCGGACCGC GACCTCGCGC TCGACCGCGC GATGATTCCG
CTCGGCTCCT GCACCATGAA ACTCAACGCC ACTACCGAGA TGATGCCGCT GACCTGGCCT
CAATTCGGCA GCCTGCATCC GTTCGTGCCG CGGGCGCAGG CGGAGGGCTA TCATGCGATG
TTCGCGACGC TGGAAGCCTG GCTCGCCGAG ATCACCGGCT ACGACGCCGT GTCGCTGCAG
CCGAATTCCG GCGCGCAGGG CGAATATGCC GGCCTGCTGG CGATCCGCGG CTATCATCTG
TCGCGCGGCG AGCCGCACCG CAAGATCTGC CTGATCCCCT CCTCCGCGCA CGGCACCAAT
CCGGCCTCGG CCGCGATGGT CGGGATGGAT GTCGTCGTGG TCGCTTGCAA CAATCATGGC
GACGTCGACG TCGACGATCT GCGCGCCAAG GCGGAGAAGC ATTCGGCCGA ACTCGCCGCG
GTGATGATCA CCTATCCGTC GACCCACGGC GTGTTCGAGG AGCACATTCG CGAGATCTGC
GACATCGTCC ATGCCCATGG CGGCCAGATC TATCTCGACG GCGCCAACCT CAACGCGCAG
GTCGGCCTGG CGCGGCCCGG CGACTACGGC GCCGATGTCA GTCACCTCAA TCTGCACAAG
ACTTTCTGCA TTCCGCATGG CGGCGGCGGC CCGGGGATGG GGCCGATCGG CGTCAAGGCG
CATCTGGCGC CGTTCCTGCC CGGCCACCCG GCCGAGGGCG AGCCGTCGAG CGGCGTGCTG
CACGGCGGCG GCACGGTGTC GGCAGCGCCC TATGGCTCGG CGTCGATTCT CACGATCTCC
TATATCTACA TTCTGATGAT GGGCGGCGCC GGCCTGAAGC GGGCCACCGA GATCGCGATC
CTCAACGCCA ACTACATCGC GGCGCGACTG CAGCCGCATT TCCCGGTGCT GTATCGCAAC
CTGCGCGGCC GCGTCGCGCA TGAATGCATC GTCGATCCGC GACCGCTGAA GACGACGACC
GGGGTGACGG TCGACGACAT CGCCAAGCGG CTGATCGACT ACGGCTTCCA CGCCCCGACC
ATGAGCTTCC CGGTGCCGGG CACGCTGATG ATCGAGCCAA CCGAATCGGA GTCCAAGGCG
GAGATCGACC GGTTCTGCGA GGCGATGATC GCGATCCGGC GGGAGATCGC CCAGATCGAG
CAAGGCCGGT TCAAGGTCGA GGCGTCGCCG CTGCGCTTTG CGCCGCATAC GGTGCACGAC
GTCACCAGCG CGGAATGGAC GCGGCCCTAT CCGCGCACCG AGGGCTGCTT CCCGGCTCCG
AACTCGCGCA CCGACAAATA TTGGTGCCCG GTCGGCCGCG TCGACAACGT CTATGGCGAC
CGCAACCTCG TGTGCGCGTG CCCGCCGATC GAAGACTACG CACTGGCGGC GGACTACGCC
CGGGCGGCGG AGTAG
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| Protein sequence | MPNRRPIDAA NNFVRRHIGP SPQDIAQMLR TVGAGSIDQL MAETLPYAIR IKEPLSLGAP
LSETEALAHM TELAAKNAVF TSLIGQGYSG TILPTVIQRN ILENPAWYTA YTPYQPEISQ
GRLEALFNFQ TMICDLTGLD LANASLLDEA TAAAEAMALA ERAAQKKTKA FFVDRDTHPQ
TLAVLRTRAE PLGWSIIVGD PDTELEAADV FGALLQYPGS SGALRDPRPA IATLHNKGAL
AVIAADLLAL TLITSPGELG ADIAIGSAQR FGVPMGYGGP HAGYMAARDS LKRSLPGRIV
GLSIDSHGQP AYRLAMQTRE QHIRREKATS NICTAQVLLA VIAAMYAVYH GPDGLAAIAR
RVHRRTATLA SGLKQLGFAP INDAYFDTLT VEVGDKRDAI VARAEAEQIN LRIGATSLGI
SLDETTTPAI VEALWRAFDG SLDYASVERD ATDTLPAALT RTSDYLTQPA FQDYRSETEL
LRYMRKLSDR DLALDRAMIP LGSCTMKLNA TTEMMPLTWP QFGSLHPFVP RAQAEGYHAM
FATLEAWLAE ITGYDAVSLQ PNSGAQGEYA GLLAIRGYHL SRGEPHRKIC LIPSSAHGTN
PASAAMVGMD VVVVACNNHG DVDVDDLRAK AEKHSAELAA VMITYPSTHG VFEEHIREIC
DIVHAHGGQI YLDGANLNAQ VGLARPGDYG ADVSHLNLHK TFCIPHGGGG PGMGPIGVKA
HLAPFLPGHP AEGEPSSGVL HGGGTVSAAP YGSASILTIS YIYILMMGGA GLKRATEIAI
LNANYIAARL QPHFPVLYRN LRGRVAHECI VDPRPLKTTT GVTVDDIAKR LIDYGFHAPT
MSFPVPGTLM IEPTESESKA EIDRFCEAMI AIRREIAQIE QGRFKVEASP LRFAPHTVHD
VTSAEWTRPY PRTEGCFPAP NSRTDKYWCP VGRVDNVYGD RNLVCACPPI EDYALAADYA
RAAE
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