Gene RPD_1700 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1700 
Symbol 
ID4022180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1914476 
End bp1917028 
Gene Length2553 bp 
Protein Length850 aa 
Translation table11 
GC content67% 
IMG OID637961894 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_568837 
Protein GI91976178 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.99866 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATCA ACGACCATCA GGCTCCGACG ACCGCTGCGG CGGAGCCGGC GCGCCGCGGC 
GGCAGCATCG TGCTGGTTCT GCTGGTGGCG GGCGCCATCG TCGCCGCCGC CGTGGCGTTC
ATGACGCTCG GGCGCGCCGA TGCGCAGCCC TATATTCTCG GCCTGCTGGC GCTGCTGGCG
ATGGTCGGGC TGTTCATGCT GTTCGCCTTC GCCGCCGGCA TCGTCGGCTT CGCCGACCGG
GCCGCCGACG ATCCGGTGCT GCGGGCGATC GCCGAAGGCG CGTTCGACGG CATCGCGGTG
ACCGATCCGC GCGGGCATGT GGTTTACGCC AACTCGGCCT ATCTGGCCCT GACCGGCGCT
GCGACGATGC AGGACGTCCG CCCGGTCGAA CGGGTGTTCA TCGGCAATCC CGACGTCTCC
GAGGCGGTAT TCCGCCTGTT GAAGGCGGCG CGCGAGGGCA AGCGGCTGCA GGAGGAGGTC
CGGGTCGCCG GCGCCGATGG CGCGCAGGGC CGCTGGATGC GGATGCGGGT GCGTCCGCTC
GGACCCGGCA AGCGCGAGGC ACGGCAGACG GTCTGGTCGC TGGCCGACAT CACCCGCGAT
CGCGAGCACC AGGAGGACGT GTTCCAGGAG CTGCAGCACG CGATCGAATA TCTCGACCAT
GCGCCCTGCG GCTTCTTCTC GGTCAATGCC GACGGCAATC TCGTCTACGT CAACGCCACC
CTGGCGAACT GGCTCGACCA CGACCTTGCC GAGATCGGCT CCGGCGGGCT GAAGCTCGGC
GACATCGTCT CCGGCGACGG CGCGGCGCTG CTGACCTCGA TCGTGCCCGA GCCGGGTGAG
GTGAAAACCG AGGTTTTCGA CATCGATCTG AAGATGCGCA ACGGCAAGAC CATGCCGGTG
CGGCTGTATC ACAAGCTCGC CTTCGGCGCC GATGGGGCGC CCGGCGCGTC GCGCACGCTG
GTGATCAGCC GCGCCCGCGA CGAGCGGCTC GATCCGCAGC GCGCCGCCGA GATCCGCTTC
ATGCGGTTCT TCGACCACAC CCCGATGGCG ATCGCCACAG TGGACAAGTC CGGCGTCGTG
GTGCGCGCCA ATGCCCGTTT CGCCAAGCTG GCGCAGAGCC TGGATCCGAC CGGCGCCGCC
GCCAAGTCGA TCCTCGCCGC CGTCAACATC CGCGATCGCA ACACCCTCGG CGGCGCGATC
GATCAGGCCG CGCAAGGCCA GGCCGACATC GCGCCGGTCG AGGTGATGCT CGACGGCGCC
AAGGAGCGCT GGGGCCAGTT CTTCGTCACG GCGGTCGCCG ACGACGGCGA TGCCGAGGCC
GCGATCGTCT ATCTGCTCGA GACCACCGAG CGTCGCGCGC TGGAGAACCA GGTCAACCAG
GCGCAGAAGA TGGATACCAT CGGCCAACTC GCCGGCGGCA TCGCGCACGA CTTCAACAAC
GTGCTCTCGG CCATCATGAT GGCCAACGAC TTCCTGCTGA ACGCGCACAA GCCGACCGAC
CCGTCGTTCC AGGACATCAT GCAGATCAAG CAGAACGCCA CCCGCGCCGC GACGCTGGTG
CGGCAGCTGC TGGCGTTCTC GCGCAAGCAG ACGCTGCGGC CGCAGGTGCT CGATCTTCGG
GAGGCGCTGA CGGATATCGA CCGGCTGTTG AAGCGGCTGA TCGGCGAGAA GGTCACGCTC
ACAATGCCGC ACGGTCGGGA TCTGTGGCGG GTGAAGGCCG ACGTCTCGCA GTTCGAACAG
GTGATCGTCA ATCTCGCGGT CAATGCGCGC GACGCGATGC CCGATGGCGG CAAGCTGACG
ATCCGCACCT GCAACGTGAC CGCAGCGGAC GCCGCGCAGC TCGCCCACAA GGGAATGCCG
GCGGCGGACT ATGTGCGCAT CGACGTCAGC GACACCGGCA CCGGGATTCC CGCCGATATC
GTCGACAAGA TCTTCGAGCC GTTCTTCTCG ACCAAGGAAG TCGGCAAGGG CACCGGCCTC
GGGCTGTCGA CCGTCTACGG CATCATCAAG CAGACCGGCG GCTTCGTGTA TGTCGACTCG
GAGCCCGGCA AAGGCACCAC CTTCCAGATC TTCCTGCCGC GCCACGATGC GGTTGAAGTG
CAGCCGGAAG CCCCGGTCGT GACCAGCATC GCGGTGTCGA GCGAAGCGGC CGCCGCCGCC
AAGCAGCGCG CCGACATGAC CGGGCAGGGC ACCATCCTGC TGGTCGAGGA CGAAGAGGGG
CTGCGCTCGC TCAACGCCCG CGGCCTGCGC TCGCGCGGCT ACAACGTGAT CGAGGCCTCC
AACGGCATCG AGGCGCTGGA GGCGTTCGAC GAGCATGGCG GCTCGGTCGA TCTCGTGGTA
TCGGACGTGG TGATGCCGGA GATGGACGGG CCGTCGCTGT TGAAAGCGAT GCGCGCGCGC
AACTCCGACC TCAAGATCAT CTTCGTCTCC GGCTACGCCG AGGACGCCTT CGAGAAAAGC
CTGCCGGAGA ATGAACAGTT CGCCTTCCTC GCCAAACCGT TCGCGCTGAG CGCGCTGGTC
GCCAAGGTCA AGGAAACGAT GGCGCCGAAC TAA
 
Protein sequence
MTINDHQAPT TAAAEPARRG GSIVLVLLVA GAIVAAAVAF MTLGRADAQP YILGLLALLA 
MVGLFMLFAF AAGIVGFADR AADDPVLRAI AEGAFDGIAV TDPRGHVVYA NSAYLALTGA
ATMQDVRPVE RVFIGNPDVS EAVFRLLKAA REGKRLQEEV RVAGADGAQG RWMRMRVRPL
GPGKREARQT VWSLADITRD REHQEDVFQE LQHAIEYLDH APCGFFSVNA DGNLVYVNAT
LANWLDHDLA EIGSGGLKLG DIVSGDGAAL LTSIVPEPGE VKTEVFDIDL KMRNGKTMPV
RLYHKLAFGA DGAPGASRTL VISRARDERL DPQRAAEIRF MRFFDHTPMA IATVDKSGVV
VRANARFAKL AQSLDPTGAA AKSILAAVNI RDRNTLGGAI DQAAQGQADI APVEVMLDGA
KERWGQFFVT AVADDGDAEA AIVYLLETTE RRALENQVNQ AQKMDTIGQL AGGIAHDFNN
VLSAIMMAND FLLNAHKPTD PSFQDIMQIK QNATRAATLV RQLLAFSRKQ TLRPQVLDLR
EALTDIDRLL KRLIGEKVTL TMPHGRDLWR VKADVSQFEQ VIVNLAVNAR DAMPDGGKLT
IRTCNVTAAD AAQLAHKGMP AADYVRIDVS DTGTGIPADI VDKIFEPFFS TKEVGKGTGL
GLSTVYGIIK QTGGFVYVDS EPGKGTTFQI FLPRHDAVEV QPEAPVVTSI AVSSEAAAAA
KQRADMTGQG TILLVEDEEG LRSLNARGLR SRGYNVIEAS NGIEALEAFD EHGGSVDLVV
SDVVMPEMDG PSLLKAMRAR NSDLKIIFVS GYAEDAFEKS LPENEQFAFL AKPFALSALV
AKVKETMAPN