| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1639 |
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| Symbol | |
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| ID | 4022119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 1838455 |
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| End bp | 1840776 |
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| Gene Length | 2322 bp |
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| Protein Length | 773 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637961834 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_568777 |
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| Protein GI | 91976118 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.858734 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGGGT TCGCAGCACT CACGGTCGGA TTCCAGTTTT CAAAGCGTGG CGAGTTCACT
CCCACCCGTC AAACCGAAGC CGCTGCAACC TTCGTCGGCA GCGAAACATG CGCTGGCTGT
CACCCAACCG AAGCAAATTC GTGGAGTACA TCGCAGCACA AGGCCGCTAT GCAGCACGCC
ACCGACCGGA CCGTGCTCGG CAATTTCAAC GATGCAAGCG TCGACTACTA CGGCTCGCGC
TCCCGCTTCT TCCGCAAGGA CGGCAAATTC TGGGTCGAGA CCGATGGCGC CGACGGCAAG
CCGGCAGTGT TCGAGGTGAA GTATACATTC GGTATCGATC CCTTGCAGCA ATACCTGGTC
GAATTCTCCG ACGGACGCCT GCAGGCATTG CCGCTCGCCT GGGACTCGAG ACCGCAGGAC
AAGGGCGGCC AACACTGGTT TCACCTCTCA CCCGATGAGG AAATCCGGCA CGACGATATC
CTCCACTGGA CCAAGCTGAA CCAGAACTGG AATTTCATGT GCGCGGAGTG TCACTCGACC
GGACTGCGCA AGAATTATGA CGCCAGAACG GATCGTTTCG CGACGACCTG GGCGGAGATC
AGCGTCGGCT GCGAAGCCTG TCATGGGCAG GGCTCGCGTC ACGCCGCCTG GGCGCGCGAT
CAGCACAGTT GGTGGCCGTT CGGCCGGCGG CAAGACGCCA GTAAGGGATT GCTGGTTCGT
TTCGACGAAC GCCAAGGCAT CATTTGGCCG ATGGACCCAC GAAGCGGGAA CACGCAACGC
TCGGCAGCCC CGGCAACGCT ACGCAAGGAG GTCGAAACCT GCGGTCTCTG TCACGCCCGC
CGGGCCGGCT TCGACGAGAA CTGGATACCG GGGCGATCCT TGTCGCAAAC CCATGCCGTC
GAAGCGCTTG CGCGCAACAC CTACCATGCC GACGGCCAGA TCCGGGACAA CGAGGAGGCG
TATAACTACA CCCCTTTCAG GCAAAGCAGG ATGTTTGCCG CCGGCGTGAC TTGTAGCGAC
TGCCACGAGC CGCACAGCGG CAAGCTGCGC CTCGCCGGCG AAGGCGTCTG CCTGCAATGT
CACGCGTCCG ACAAATATGC CGGCGTGGAC CATCGCCGCC ACGCCGCGAT CGACCGGGCG
CCAACCTGCA TCTCGTGCCA CATGCCGACC CGGACCTATA TGGTGATCGA TGTCAGGCAC
GATCACGCGT TCAGAATTCC GCGCCCTGAT CTTTCCGTCA CGCTCGGGAC CCCGAATGCC
TGCAACGACT GTCATCAGGA CAAGTCGCCA CAGTGGTCGG CGGCAGCCGT CGAACGATGG
TACGGCCCGG TCCGCAAGGA CTTGCGGTCT TACGCAGCGG CATTTCATGC CGCCCGCACC
GACCAGGTCA ATGCTGCCGC GCTGCTATCT GTGCTCGCGG CGGATCGCCA GGCGCCCGCC
GTGGTTCGCG CCAGCGCGCT TGGCGAACTG GGCGCGCGCG TCTCGGCCGC GCATGTCACG
ATGACCCGAG CCGCTCTCGC CGATCCTGAT CCGATCGTGC GGATCGGTGC GCTCGACATG
TTGGACAACG TTCCCGTCGG TCAGCTCTGG CCCTTCGCGT CCCCGTTGTT GTCCGATCCT
GTCCGCGGGG TCCGGATCAG GGCGGCAGCG CTGCTGGCGG CGGTGCCGAC CGCAAGCCAG
CCAGAACGGG ACCGAGTGGC ATTCGATCGT GCGGCCTCTG AATTTGTCGA TGCGCAACGC
GCCAATGCCG AGCGTCCGGA AGCCCGGACC ATGCTTGGAA ATTTTCTGAC GCAGCGCGGC
CTGATGTCCG AGGCTGAGGC CGAATACAGG GCGGCGCTCA GTCTGAGCCC ACAATACGCC
ACGGCCGCGA TCAACCTCGG TGACCTCTAT CGGCAGCGCG GCCGGGACAG CGAGGGCGAA
ATTGTCCTTC GCGCCGCATT GGCGGTTTCT CCGCGGGATG CGGCGCTGCA TCACGCGCTG
GGCCTCAATC TGACGCGCCT GAAGCGGCCC GACGACGCGC TCGGCGAATT GCAGCGCGCG
ACGGATCTCG AGCCGGAGCA GCCGCGTTAC CCTTATGTCT ACGCTGTTGC GCTGCATTCC
AGCGGCCGCC GCGCAGAAGC CATGACCGTC CTCAAGGGCG CCCTTCGCAC CCATCCTAAC
AATCCCGAGA TTCTTCGGGC CCTCTTATCG TTCACCCAGA TGGCCGGCGA TACTCCGGCG
GCGCTCGGTT ATGCCGAGCA GCTCGCCATC GTCACGCCGG ATGACAAAGA GCTTGCGGAG
GTGATCCTCA AGCTTCGCAG CGCCGCCACG CCGCGACAAT GA
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| Protein sequence | MIGFAALTVG FQFSKRGEFT PTRQTEAAAT FVGSETCAGC HPTEANSWST SQHKAAMQHA
TDRTVLGNFN DASVDYYGSR SRFFRKDGKF WVETDGADGK PAVFEVKYTF GIDPLQQYLV
EFSDGRLQAL PLAWDSRPQD KGGQHWFHLS PDEEIRHDDI LHWTKLNQNW NFMCAECHST
GLRKNYDART DRFATTWAEI SVGCEACHGQ GSRHAAWARD QHSWWPFGRR QDASKGLLVR
FDERQGIIWP MDPRSGNTQR SAAPATLRKE VETCGLCHAR RAGFDENWIP GRSLSQTHAV
EALARNTYHA DGQIRDNEEA YNYTPFRQSR MFAAGVTCSD CHEPHSGKLR LAGEGVCLQC
HASDKYAGVD HRRHAAIDRA PTCISCHMPT RTYMVIDVRH DHAFRIPRPD LSVTLGTPNA
CNDCHQDKSP QWSAAAVERW YGPVRKDLRS YAAAFHAART DQVNAAALLS VLAADRQAPA
VVRASALGEL GARVSAAHVT MTRAALADPD PIVRIGALDM LDNVPVGQLW PFASPLLSDP
VRGVRIRAAA LLAAVPTASQ PERDRVAFDR AASEFVDAQR ANAERPEART MLGNFLTQRG
LMSEAEAEYR AALSLSPQYA TAAINLGDLY RQRGRDSEGE IVLRAALAVS PRDAALHHAL
GLNLTRLKRP DDALGELQRA TDLEPEQPRY PYVYAVALHS SGRRAEAMTV LKGALRTHPN
NPEILRALLS FTQMAGDTPA ALGYAEQLAI VTPDDKELAE VILKLRSAAT PRQ
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