Gene RPD_1622 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1622 
Symbol 
ID4022102 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1819019 
End bp1820875 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content62% 
IMG OID637961817 
Productcarbamoyltransferase 
Protein accessionYP_568760 
Protein GI91976101 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG2192] Predicted carbamoyl transferase, NodU family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGGTTG CGATATCCGC GGCCGCCGGG CCTTCAGAAA AGTGGTCAAT GTCAAATCAA 
CACACCTACA TCCTCGGCCT CAACACCTAC GATCACGACG TCAGCGCCGT GCTGTTGCGC
GATGGCGAGA TCGCCTTCGG TATCGCGAAG GAACGAATTA CCCGCGAGAA GCACGCCAGC
GGCTTCTACA AGGAGGTCAT CGACTATTGC CTGAATGCCG AAGGCATCAC GATGGCCGAT
GTCGATCTGG TGGTGCGCAA TTGCTACATC CTGCCGGTGC AGGAGATGGA GGACCGGCTG
ATCTATCAGG ACATGCCGGC CTTCCTGCCC GAATATGAGC GCGGCGACGC CGGCACCCAT
GCGCTGTTCC GCACCAATTC CAATAAGGTG ATGACGATCT CGCATCACCT CGCGCATGCC
TACAGCGCGT TCGCGGTGTC GCCATTCGAT GAAGGCGTGG TGATGGTCGT CGATGGCGTC
GGCAGCTATC GCTCCGACGT CGACGAGAGC TTTCCCGGCG ACGAAGCCAG CCCGCTCGCA
CGCGAATCCG AGAGCTACTA CAAGTTCAGC GGCAGCAAGC TCGAGTGCCT CAAGAAAATC
TGGATGGAAC CGGTGCGCGG TTTCCTCAGC GACGAGTTCT ACAACATGCC CGGGCTCGGC
GCGTATTACA GCCGCGCCTC GACCTATGTA TTCGGCGACT GGAACAAATG CGGCGAGCTG
ATGGGTCTCG CGCCATACGG CCGCCCCGGC GCCGTGAAAC CGATGCTGCA GATCGAGAAC
AATGTTCTGA CGGTGCCGCA TTGGACTCCC GAATTGAACC AGCCCTACAT CATGGACTCG
CCCGGCAAGT GGGAGAGCCA CCCCTCGATG CGGCATTGGG AGGACATCGC CTGGCAGGTC
CAGGACGACA CCGAACGCGT TCTGCTGGAG CGGGCGCGCT GGCTGCGCGA GACCACCGGC
GCGAAGAATC TCTGCATCGC AGGCGGTGTG GCGCTGAACT GCGTCGCCAA CGGCCGGATC
GCGCGCGAGA GCGGCTTCGA AAACGTCTGG ATCCAGCCGG CCGCCGGCGA CGACGGTATC
GCGATCGGCT GTGCTTACTA CGGCCATCTC GCAGTCCAGC AGAAGCAGCG CTCATTCGAG
ATGAAGCACG CCTTCATCGG CCGGGCCTAC ACCGAGGGCG AGGTCGAGGC AGCGACCAAG
CGGTTCTTCG TCAAGCCGCA GATCAACATA ATCCGCAGCA ACAGCGTCTA CAAGGAAACC
GCCAAGCTGC TCGCAGACCA GAAGGTGATC GGGTGGTTCC AGGGCTCTTC CGAGTTCGGC
CCCCGCGCAC TCGGCCATCG CAGCTTGCTC GCCGACCCGC GCAAGGCGGA GATGAAGGAC
ATTCTCAACA GTCGTGTGAA GCATCGCCAG CCGTTCCGCC CCTTTGCGCC GATCGTGCTG
AAAGAACGCG CCGACGAGAT TTTCGAAGGC ACAGGCGACT CGCCATTCAT GCTGATGGCG
AAGCCGGTGG CCGCGGCGTG GCGTGACAAG ATTCCCGCTG TGGTCCACGT CGACGGCACC
GCGCGTGTGC AAACGGTGGA CGAAGAGACC GCACCGGACC TCTATTACAT CCTGAAGGAG
TTCGAGGCCC TCACCGGCGT GCCGGTGCTT GTGAACACTT CGTTCAACAT CAAGGGCGAG
CCGATCGTCG AGACGCCGCG TGACGCGATG GCCTGCTTCC TCACCACCGG CATCGACCAT
CTGGTGATGC ACGATACCAT CGTGTCGAAG AACAAGGCGC ACCGCTTCAT CAACCCGGTG
CTCGAGGTCT ATTCCGACGT CAGCAATCTG GTGCGATCGG CCACCCGCGC GGGCTGA
 
Protein sequence
MPVAISAAAG PSEKWSMSNQ HTYILGLNTY DHDVSAVLLR DGEIAFGIAK ERITREKHAS 
GFYKEVIDYC LNAEGITMAD VDLVVRNCYI LPVQEMEDRL IYQDMPAFLP EYERGDAGTH
ALFRTNSNKV MTISHHLAHA YSAFAVSPFD EGVVMVVDGV GSYRSDVDES FPGDEASPLA
RESESYYKFS GSKLECLKKI WMEPVRGFLS DEFYNMPGLG AYYSRASTYV FGDWNKCGEL
MGLAPYGRPG AVKPMLQIEN NVLTVPHWTP ELNQPYIMDS PGKWESHPSM RHWEDIAWQV
QDDTERVLLE RARWLRETTG AKNLCIAGGV ALNCVANGRI ARESGFENVW IQPAAGDDGI
AIGCAYYGHL AVQQKQRSFE MKHAFIGRAY TEGEVEAATK RFFVKPQINI IRSNSVYKET
AKLLADQKVI GWFQGSSEFG PRALGHRSLL ADPRKAEMKD ILNSRVKHRQ PFRPFAPIVL
KERADEIFEG TGDSPFMLMA KPVAAAWRDK IPAVVHVDGT ARVQTVDEET APDLYYILKE
FEALTGVPVL VNTSFNIKGE PIVETPRDAM ACFLTTGIDH LVMHDTIVSK NKAHRFINPV
LEVYSDVSNL VRSATRAG