| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1563 |
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| Symbol | |
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| ID | 4022043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1754138 |
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| End bp | 1755493 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637961758 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_568701 |
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| Protein GI | 91976042 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.838754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATG TCGATTCCAG CGAGTTCGTC CCGGTTGCCG TGAGCCCTCG AGAGTCAGGG
GCAACGAGCG AAGACAAGCC GTTCCGGCTT TGGCCGCGTG TCCTCGGCGG CGTTTCGCTG
GTTGCGTTGC TGGTGATCGG CTGCGGCGGC TGGAGCGCGC TGGCAAAGCT CGAAGGCGCT
GTGATCACAT CCGGCGCGGT GAAAGTCGAT CAGAACCTCA AGGAGGTCCA GCACCGGGAT
GGCGGCATCG TCAAGATGCT CGCCGTGCGC CAGGGCGATT TCGTCCGCGA GGGGCAGGTG
TTGGCGACGC TCGACGACGT GCAGATCAAG GCCGAACTGT TGATCGTCCG TTCGCAGTTG
AGCGAAGCCC TGGGACGGCG TGCGCGGCTG ACCGCCGAGC GTGACAATCT CGCCGCCATC
GACTTCCCCT CGGAACTCAC GGGGCTCAGC ACGACGTCGG AGACTGTGAT GGTCGGCGAA
CGTCGGCTGT TTGCCGGCAA CAAGCTGACC CGGGACAGCC AGAAAGAACA GCTCGAGCTC
AGCGTCGGCC AGACTGGCGA GGAGATCAAC GGCATGGAGG CGCGGCTGGC GGCCAAGGAA
GAGGAGATCA AGCTGGTCAG TGCCGAAAGA GAGAAACTGC TCGGCCTGTT CGACAGGAAA
ATCGTGGAAT ACGCCCGCGT CTATTCGGTG CAGCGCGACT GGGCGCGGAT TCTCGGCGAG
CGCGGCGAGA TCGCCGCCGG CATCGCGCGG GCCAAGGTGC GCACCACCGA GATCCGGCTG
CAGATCATTG CAGTCGATCA GAATGCCAGC ACGGAGGCGC AGCGCGAACT ACGCACGGTC
GATGCACGAA TCGCGGAACT CAGCGAGCGA AGGGTGGCAA TCGAGGATCG GCTCGCACGG
ACCGACATCA AGGCGCCGAT CGCCGGCTAC GTCAACGAGC TGTTCGTGTT CACGGTCGGT
GGCGTGATCA CGCCGGCGGC GCGGATCGCG ACGATCGTTC CCGACAACGC TGCGCTGCGC
TTCGAGGTCA AGATCGCGCC GGTGGATATT GACCAGGTCC GTGAGGGGCA GCCCGCGCGC
GTCCGGCTGT CGGCATTCAG CCGCGCGACG ACGCCCGAGC TGCAGGCCCG TGTCGCACAG
GTTTCGCCCG CGCCCGCGCG CGATCCGGCG ACGGGCCAGG AGAGCTACAT CGCCTATGTG
CAATTGACCG ACGAAGCCGC TGCGCTGATC CACGGCCTTC GCCTGGTGCC CGGAATGCCG
GCGGAGGTCT TCATCTCCAC CCAGGAGCGG ACGGCCGCGT CCTATCTGCT GAAGCCGATG
AGCGACCAGT TCAACCGAGC CTTCCGGGAA CGTTGA
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| Protein sequence | MKHVDSSEFV PVAVSPRESG ATSEDKPFRL WPRVLGGVSL VALLVIGCGG WSALAKLEGA
VITSGAVKVD QNLKEVQHRD GGIVKMLAVR QGDFVREGQV LATLDDVQIK AELLIVRSQL
SEALGRRARL TAERDNLAAI DFPSELTGLS TTSETVMVGE RRLFAGNKLT RDSQKEQLEL
SVGQTGEEIN GMEARLAAKE EEIKLVSAER EKLLGLFDRK IVEYARVYSV QRDWARILGE
RGEIAAGIAR AKVRTTEIRL QIIAVDQNAS TEAQRELRTV DARIAELSER RVAIEDRLAR
TDIKAPIAGY VNELFVFTVG GVITPAARIA TIVPDNAALR FEVKIAPVDI DQVREGQPAR
VRLSAFSRAT TPELQARVAQ VSPAPARDPA TGQESYIAYV QLTDEAAALI HGLRLVPGMP
AEVFISTQER TAASYLLKPM SDQFNRAFRE R
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