| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1562 |
|---|
| Symbol | |
|---|
| ID | 4022042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1751808 |
|---|
| End bp | 1754117 |
|---|
| Gene Length | 2310 bp |
|---|
| Protein Length | 769 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637961757 |
|---|
| Product | RTX toxins and related Ca2+-binding proteins-like |
|---|
| Protein accession | YP_568700 |
|---|
| Protein GI | 91976041 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.618227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTACAG CCAAGCCGAT CAGGCAATCT GAATCCAAGA CGCCGACGCG CGAAGACTAT
GTCAGCGAGG AATCGGACAA GCGCCGCTGG GTGCCGCTCG CCTTCTTGCT GTTCTTGACC
GGCTGCGCCG CCTATCTGAA GAGTTTCATG CCGGTGGGGC TCGAAGCGCG CGAGGAAGGC
AAGCCGAAAC CGCCGGGTGG TGATGACGAG GCAGCCGGTC CGAAGCCCGA TGAAGCCATC
GCCACCGAGG ACGATGATCT CACGACCGCA AGTATCCGGC CTCAGCCTAA ATCGTCCGAC
AATGTCATTC CGGTGCGGTT CGCCCTCTCG AAGGACGGCG CCGTCGTGAT GACGTCCGCG
CCACCGCTGA GTTCAAACGA TCAGCCTCCG CCAGTGACGA TCGACCGCTC GACGTTCGGG
GACCGCCCGG GTGCCCCCAA CGACAACCGG GCCGGCAATC CCGGAGGTGG CGGCGGAGGT
GGCGGCGGAG GCGGCGGAGG CGGCGGAGGT GGCAGCGGCG ATCGCGGGAG TGGAAACGAC
GGCCCGCTGC GGCCGCCGCC GGAACGTCCT CCTTCGGTCA ACCCGCCTAC ATCCGAAAAC
CAGCGCAATC GCGCGCCGCG CGTCACCGGG CCTGTCTATC TGTCGAACGT CGTCGGCTGC
GAAGGCATGA CGATTGCGGT ACTGGCTCTG CTCGCCGGGG CCACCGATCC CGATGGCGAT
GCGCTTCGTG TCCTCGGGGT CAAGTCGAGC TCCGGCACGC TGAAGCAAGC GGACGATGGA
AGCTGGGTTT TCGCGCGAGA TCAGGGAATG CTCGGCGAGG TGACGCTGAC CTACTGGATC
ACCGACGGCA ATCTGCTGAT CAAGCAGACC GCGCATTTCA ACGTCGTCGA ACCGCCGCCG
ATCATCGGTG GCGCCGGCGA CGACAATCTG CTGGGCACGC GCTGCGCCGA CACGATCATC
GGCAATGCCG GTGACGATAA TATCGACGGC CGCGAGGGCA GCGATACGAT CAGCGGCGGC
GAGGGCCACG ATCATATCGT CGCCGGATCC GGAAATGACA TCGTCTATGC GGGCGCCGGC
AACGACATCG TTTTCGCAGG CCCGGGCAAC GACGTGGTGT TCGGCGGAGC AGGGAACGAT
CGCCTGTTCG GCGAGGACGG TGACGACATC CTGTTTGGCG AGGACGGCAA CGACACTCTG
TTCGGCGGCG CCGGGGCCGA TATCCTGATC GGGGATGTGG GCGACGATAG GCTTTACGGC
GACGCCGGCA ATGACACGCT CGACGGTGGT GACGGCGACG ACGAGCTCGA CGGCGGCGAC
GGCAACGATC GGATGGCCGG CGGCGACGGC GACGACACCC TGGCGGGCGC CGCCGGCAAC
GACACGCTGA TCGATGGGCT TGGCGCAGAC ATCGTTCGCG GCGGCACCGG CAACGATTAC
GTCGTCGCCG CGGCGGACGG CGCGCCGGAT GACTATTCCG GCGATGCCGG TCGCGACACG
CTGGACTATT CTGCCGCAAA CACGCGCATC GCCGTGGACT TGGAGCGGGG CACGGCCGAT
GGCGACGAGA TCGGCCATGA CACGATCGCT GGCTTCGAGG AAATTATCGG CGGCAGCGGC
GATGACGATC TCAGCGCCGG CGCCGATGCG GTGACGATCC GGGGCGGTTC GGGTGACGAT
CTGGTTTCCG ATGGCGCCGG TGAGGACGTC GTTGACGCCG GCGCGGGCGA TGACCGCGTG
CTGGCGGCGA TGGATGGCGC CGACGACCGA TACGACGGCG GAGCCGATTG CGATACCATG
GACTACTCGC GGGCAACGCT GCGGGTGAAC ATCGATCTCG GCGAGGAGAC AGCGGAAGGC
ATCGAAATCG GCAAGGACCT GCTTGCCAAT TTCGAACGGA TCATCGGCGG TAGCGGTGAC
GACGACTTCA TAGCCGGGTC ATCCTCGGTG TCGTTCACCG GCGGCGAGGG CAACGACACG
TTCCAGTTCC AGCGACGGGA CGATGATCAT CAGCCCGACA TCGTCCGCAA GATCACCGAT
TTTTCGGTCG GAGATCGCAT CATCGCCGCG ACTTACGAAA TCTACTATCG CGACGAGGAC
GCCGCCGCCG ATCAAGTCGC CGATCTTTTC GAGGACATCT ATCTCGCCGA TCAAGGCGAT
CAGCGGCCCG TCCGCTTCCG GTTCGAAAAG CAGGACAACG ACGAATTCAC GATCATCGAG
GTGCAGGACA GGCCCGACAA TGATCAGGAT TTCTACGCGA TCCAGCTGTC CGGTCATCAT
CAGCTTCAGT TCACCGTGTC GGTGTCCTGA
|
|---|
| Protein sequence | MITAKPIRQS ESKTPTREDY VSEESDKRRW VPLAFLLFLT GCAAYLKSFM PVGLEAREEG
KPKPPGGDDE AAGPKPDEAI ATEDDDLTTA SIRPQPKSSD NVIPVRFALS KDGAVVMTSA
PPLSSNDQPP PVTIDRSTFG DRPGAPNDNR AGNPGGGGGG GGGGGGGGGG GSGDRGSGND
GPLRPPPERP PSVNPPTSEN QRNRAPRVTG PVYLSNVVGC EGMTIAVLAL LAGATDPDGD
ALRVLGVKSS SGTLKQADDG SWVFARDQGM LGEVTLTYWI TDGNLLIKQT AHFNVVEPPP
IIGGAGDDNL LGTRCADTII GNAGDDNIDG REGSDTISGG EGHDHIVAGS GNDIVYAGAG
NDIVFAGPGN DVVFGGAGND RLFGEDGDDI LFGEDGNDTL FGGAGADILI GDVGDDRLYG
DAGNDTLDGG DGDDELDGGD GNDRMAGGDG DDTLAGAAGN DTLIDGLGAD IVRGGTGNDY
VVAAADGAPD DYSGDAGRDT LDYSAANTRI AVDLERGTAD GDEIGHDTIA GFEEIIGGSG
DDDLSAGADA VTIRGGSGDD LVSDGAGEDV VDAGAGDDRV LAAMDGADDR YDGGADCDTM
DYSRATLRVN IDLGEETAEG IEIGKDLLAN FERIIGGSGD DDFIAGSSSV SFTGGEGNDT
FQFQRRDDDH QPDIVRKITD FSVGDRIIAA TYEIYYRDED AAADQVADLF EDIYLADQGD
QRPVRFRFEK QDNDEFTIIE VQDRPDNDQD FYAIQLSGHH QLQFTVSVS
|
|---|
| |