Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_1561 |
Symbol | |
ID | 4022041 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 1750060 |
End bp | 1751811 |
Gene Length | 1752 bp |
Protein Length | 583 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637961756 |
Product | Type I secretion system ATPase, PrtD |
Protein accession | YP_568699 |
Protein GI | 91976040 |
COG category | [R] General function prediction only |
COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.323729 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAAGC CGAAAGAACT TTCGTCTGCG AAGCGGCGAA ATCTCGCCGA GCTGACCCGT GGTTTGCGCG GCGTTGCGAT CTTCCTGTTT CTGGTCTCCG GGATGATCAA TATTCTGGCG CTGACCGGAT CGCTGTACAT GATGCAGATC TACGATCGCG CGCTCACCAG CGGCAGTATT CCAACGTTGC TGCTGCTGTC GGCGCTCGCA GCCGGACTCT ACCTTTTCCA GGGCTGCTTC GACGTGATCC GGTCGCAGGT GCTGGTGCGG GTCGGCGCGC GGCTCGACAA GAAGATCGCG CCGCTGGCGC ACCGCGTCGC GATCGACATG CCACGGTTCG GCTTCTCGAC CTCCGAAGCG CTCGAGCGCG GTCGCGACGT CGACACGGTT CGCGGATTCC TTGGCAGCCA GGGTCCGTCC GCGCTGTTCG ATCTGCCGTG GATGCCGATC TATCTCGTCT TCATCTACTT CCTGCACCCG CTGCTCGGGG CGCTCACCTT CGCCGGTGCC TTCGTGCTGA CGATCATGAC GGTCGTCAGC GAGGTCCTGA CCAAGCGCCT CAGCATCGCC ACCCGCAAGG CGGCGATGGC GCGCAACACC ATCGCGGATT GCAACGCGCG CAATGCCGAA GTGCTGAAGG CGATGGGATT CGCAGATCGT GCCGTCAGTC GGTTCAATAT CGCCAATGGC GAGCACCTCG AGTTGCAGAC CAAGGCAAAC GACATCACCG GCAATTTCGC GGCGGTGTCG CGGGTGTTGC GGATGCTGCT GCAGTCGGCG GTGCTTGGTC TTGGCGCCTA CCTCACGATC AAGAACGAGC TGTCGGCCGG CGCGATCATC GCCTGCTCGG TGGCTTCGGC GCGCGCGTTG GCGCCGGTCG ATCTCGCGAT CGGCAACTGG AAGTCCTTCA TCGCAGCGCG CATGGCTTAT CACCGCCTGC GCGACACCGT GGTGGCGCTC GCTTCGGCAG ACGAACCGAT GCAACTGCCG CCGCCGAAGA ATCGCCTCAC CGTGGAGAAG GCGACGATCG CCGTGCCGGG CACCGGCCAG ATCGTGCTCA GCGATGTCAG CTTCGAACTC GAGGCCGGGC AGGCGCTCGG GGTGATCGGC CCGAGCGCCG GCGGCAAGAC CACCCTGGTC CGCGCGCTGA CCGGGATCTG GCCACTGCTA CGCGGCAGCG CGCGGCTTGA CGGCGCTGAT CTCAGCCAGT GGCGCGAGGA CGAGATTGGA CGGCACATCG GCTATCTGCC GCAGGAAGTC AGCCTGATGG ACGCGACCAT CGAAGAGAAC ATCTGCCGCT TCGAGCCGCA GCCCGACTAT CGCAAGGTGG TGGAAGCGGC CAAGGCGGCC GGCGTGCACG AGATGATCGT CAAGTTGCCG GACGGTTATC GAACCCAGCT CGGCCCGCAG GGTTCGTCGC TGTCGGCCGG CCAGCGTCAG CGCGTCGCGC TGGCGCGGGC GCTGTACGGC AATCCGTTCA TTGTGGTGAT GGACGAGCCG AACTCGAATC TCGACGGCGA GGGTGAAGCA GCGCTCACCG CCGCGATCGA AGGGATTAGC GCGCGTGGCG GCATTACCGT CGTCATCGCG CATCGGCCGA GCGCCCTGGT GGCGGTTGAT CTGGTGGCGA TCGTCCAGGG TGGACGCATG GTCGCGTTCG GCAAGAAGCA GGACATCATG ACGCCGGGCC TGCAGCCGCA GGCGCGGCCG GCGGCCGAAG AGCCGCAGGA ACTGATCCGG AGGCCGGCAT GA
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Protein sequence | MAKPKELSSA KRRNLAELTR GLRGVAIFLF LVSGMINILA LTGSLYMMQI YDRALTSGSI PTLLLLSALA AGLYLFQGCF DVIRSQVLVR VGARLDKKIA PLAHRVAIDM PRFGFSTSEA LERGRDVDTV RGFLGSQGPS ALFDLPWMPI YLVFIYFLHP LLGALTFAGA FVLTIMTVVS EVLTKRLSIA TRKAAMARNT IADCNARNAE VLKAMGFADR AVSRFNIANG EHLELQTKAN DITGNFAAVS RVLRMLLQSA VLGLGAYLTI KNELSAGAII ACSVASARAL APVDLAIGNW KSFIAARMAY HRLRDTVVAL ASADEPMQLP PPKNRLTVEK ATIAVPGTGQ IVLSDVSFEL EAGQALGVIG PSAGGKTTLV RALTGIWPLL RGSARLDGAD LSQWREDEIG RHIGYLPQEV SLMDATIEEN ICRFEPQPDY RKVVEAAKAA GVHEMIVKLP DGYRTQLGPQ GSSLSAGQRQ RVALARALYG NPFIVVMDEP NSNLDGEGEA ALTAAIEGIS ARGGITVVIA HRPSALVAVD LVAIVQGGRM VAFGKKQDIM TPGLQPQARP AAEEPQELIR RPA
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