Gene RPD_1487 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1487 
Symbol 
ID4021966 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1654589 
End bp1656292 
Gene Length1704 bp 
Protein Length567 aa 
Translation table11 
GC content61% 
IMG OID637961681 
Productmagnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 
Protein accessionYP_568625 
Protein GI91975966 
COG category[C] Energy production and conversion 
COG ID[COG1032] Fe-S oxidoreductase 
TIGRFAM ID[TIGR02026] magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGCATCC TGCTCATACA CCCGAATTAT CATTCCGGTG GCGCCGAGAT CGCCGGCCAC 
TGGCCCCCGG CGTGGGCGCC GTATCTGGCG GGCGCGCTGA AGACAAACGG GTTCACCGAC
ATCAAGTTCG TCGACGCGAT GACGGAGGAT CTTTCGGAAG ATAAGCTCGC CGCGATCATG
GCGGAGTACA AGCCCGACCT GGTCGGCGTC ACCTCCATCA CGCCGTCGAT TTACGCGGCC
GAGCAGACGC TGAAGACGGC CAAGCAGGTC GATCCGAAGG TCGTCACCAT GCTGGGCGGC
GTGCACGCCA CCTTCATGTA TCAACAGGTT CTGACCGAAG CGCCGTGGGT CGACGTGATC
GTGCGCGGCG AAGGCGAAGA GATCGTCGTC GAGCTCGCGC GTGCGGTCGA GTCCGGCCAG
TGGCAGGCCA ATCGTGCGGA GATCAAGGGT CTCGCTTACA CCGAGGGCAT GAACGGCGAG
AGCAAGATCG TCGCCACGCC GGCCGCGCCG ACGGTGAAGG ACCTCGACGC GATCAGCCCG
GATTGGGGCA TCCTCGACTG GACCCTTTAC AAATACATCC CGATGAACAC CCGCGTCGCG
ATCCCGAACA TGGCGCGCGG CTGTCCGTTC ACCTGTTCGT TCTGTTCGCA GTGGAAATTC
TGGCGCGACT ATCGCGTTCG CGACCCGAAG AAGGTGGTCG ACGAGATCGA AGAGCTGGTG
AACAAGTATC AAGTCGGCTT CTTCATTCTG GCCGACGAAG AGCCCACCAT CAACCGCAAG
AAGTTCATTC AGTTCTGCGA AGAACTGATC GCGCGCGGCC TGAACAAGAA GGTGCAGTGG
GGCATCAACA CCCGCGTCAC CGACATTCTG CGCGACGAGC AGCTGCTGAA GTTCTACAAC
GAAGCCGGCC TGATGCACGT CTCGCTCGGC ACCGAGGCTG CGGCGCAGCT CAAGCTCGAC
CTGTTCAACA AAGAGACCAA GATCTCCGAC AATAAAAAGG CGATCCGCCT GCTGCGCGAA
GCCGGCATCG TCGTGGAAGC CCAGTTCATC GTCGGCCTCG ACAGCGAAAC CCCGGAGACG
CTGGAAGAAA CCTATCGCAT GGCGATGGAC TGGAAGCCGG ATCTCGCCAA CTGGTCGATG
TACACGCCGT GGCCGTTCAC GCCGCTGTTC AAGGAACTGA GCGACAAGGT CGAGGTGTTC
GACTTCGCCA AATACAACTT CGTCACGCCG ATCGTGAAAC CGGCGGCGAT GGAGCGCGGC
GAACTGCTCG ACCGGGTGAT GAACAATTAT CGCCGGTTCT ACATGTACAA GGCGTTCTTC
TCCTACCCAT GGTCCGGCAC CGGACGACGA CGACGTTACC TGCTGGGCTG CCTCAAGGCG
TTCCTGAAGG CCGGATTCGA GCGAAAGTTC TACGATCTGG GCCGGGTCGG CTATTGGGGG
CCGCAGTCGA AGAAGAAGGT CGACTTCCAC TTCGACACGA CCCGCACGAT CGCCGACGCG
CAGACCTCAG ACTGGGAAGC CAACGCCGAT CGTTCGCGAA AGTCGGCGGC CTCGCAGATG
GCCATCGTCT CGGCCTGCGG TGGCGGCTCC GAGCAGATGT CGGAACCGAG CAATTGTGAA
GTCGCCAAGG AAGCATTGGC GGAGACCGTA ACCAGCCGCA TGGTGGACAA CGCCAATGAA
GCAGGTTCGC ACACCCGCCA CTGA
 
Protein sequence
MRILLIHPNY HSGGAEIAGH WPPAWAPYLA GALKTNGFTD IKFVDAMTED LSEDKLAAIM 
AEYKPDLVGV TSITPSIYAA EQTLKTAKQV DPKVVTMLGG VHATFMYQQV LTEAPWVDVI
VRGEGEEIVV ELARAVESGQ WQANRAEIKG LAYTEGMNGE SKIVATPAAP TVKDLDAISP
DWGILDWTLY KYIPMNTRVA IPNMARGCPF TCSFCSQWKF WRDYRVRDPK KVVDEIEELV
NKYQVGFFIL ADEEPTINRK KFIQFCEELI ARGLNKKVQW GINTRVTDIL RDEQLLKFYN
EAGLMHVSLG TEAAAQLKLD LFNKETKISD NKKAIRLLRE AGIVVEAQFI VGLDSETPET
LEETYRMAMD WKPDLANWSM YTPWPFTPLF KELSDKVEVF DFAKYNFVTP IVKPAAMERG
ELLDRVMNNY RRFYMYKAFF SYPWSGTGRR RRYLLGCLKA FLKAGFERKF YDLGRVGYWG
PQSKKKVDFH FDTTRTIADA QTSDWEANAD RSRKSAASQM AIVSACGGGS EQMSEPSNCE
VAKEALAETV TSRMVDNANE AGSHTRH