| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1441 |
|---|
| Symbol | |
|---|
| ID | 4021918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 1609214 |
|---|
| End bp | 1610836 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637961633 |
|---|
| Product | beta-lactamase-like |
|---|
| Protein accession | YP_568579 |
|---|
| Protein GI | 91975920 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.168792 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCA CAATAAGGTT CTGCGGCGCC GCGCGCACCG TCACCGGCTC CTGTTACTTG
TTCGAGACCC GAACCGGCCG CTTTCTGGTC GATTGCGGTC TGTTCCAGGG TCAGAAGACT
CTGAAGGAAC TGAACTACGG CGCCTTCCCA TTTCGCCCCT CGGCGGTCGA CGCGGTGCTG
TTGACGCATG CGCATATTGA CCATTCCGGC CTGCTGCCGA AGCTACTACG CGACGGCTTT
CAAGGGCCGA TCTTCGCCAC CCGCGGCACC ATTGATCTGT GCTCCTACAT GTTGCCGGAC
GCAGGCAGCA TTCAGGAGTC CGAAGTCGCG ATGCTGAACC GCCGCAACGT CGCGCGCGGA
CGGCCGGAAG TGAGCCCGAT CTACACCCAG GCCGACGCCA TCGCTTCGCT GCAATTGTTC
CGGCCGGTAG ACTATGAGAC CTGGACCAAC GTCATTCCCG GAGTGCGCGC CCGCTACTGG
AACGCGGGCC ATCTGCTGGG CTCGGCATCG ATCGAGATCG AAATCGCCGA GGAAGGCCGC
TCCGCCTCCG CGCTGCGCGT GCTTGCCTCC GGCGACATCG GGCCCGATGA AAAGCTCTTG
CAGCCCAATC CGGAAGCGCC GTCGCATTTC GACTACGTGA TCTGTGAGTC CACCTATGGC
GACCGCATCC GCGAGGCGAC CTCGTCGCAA CTCCGCCACG AGCGGCTGGC GGCGGAAGTG
AATGCCGCCG CCGCTGCGCG CGGGGCGCTG GTGATCCCGG CATTCGCCGT CGAGCGCACC
CAAGAGCTGA TCGTCGATTT GATCGACCTG ATGGCGCGTG GCGCGATTCC GGCTGCGCCC
ATCTTTCTCG ACTCGCCGCT GGCAATCCGC GCCACAGAAG TATTCCGCCG CCACGCGGCT
AGTCTCGACG AAGACGTCGA TATCGAACGT CTGCTGTCGT CGCCGCATCT GCGCTTCACC
GAGACTGTCG AGGAAAGCAA GGCGATCGCC AAGCTCTCCG GATTTCACAT CATCATCGCC
GCAAGCGGAA TGTGCGATGC CGGCCGCATC CGCCATCATC TGAAGCGCTG GTTGTGTCGC
AGTAACGGCA CCGTGCTGCT GGTCGGCTAT CAGGCACAGG GCACACTCGG CCGCTTCCTG
CAGGAAGGCG CGACATCCGT ACGGATCATG GGCGATGAGA TCCGCGTCAA GGCACGGATC
CGACGTATCG ACGATTACTC CGGCCACGCC GACGCCAATG AACTGGCGCG CTGGATCGCA
GCGCGTCGTC CGATCGAGCG CGGGCTGTTT CTCGCGCATG GCGAGGAAAC CGCGATCGCT
GCGCTGGCAG AGCGGATCTC CGGCGGAGTG TTGCCTGCCG CAAAGATCTT CCAGCCGGTG
CTGGATGACA TCTACGAACT TGCGGCGGCC AGCCCGACAC CGCTCGACGC CAAACATCGC
CGCCGGCTCG AACCCGAGGC CGTGGTCAAG CTCGACTGGC ACAACGACAT GTCGAAGCTC
ATCCTCGATA TCAACGAACG CATCGAGACG GCGGCGGACG CCCGCGCTCG CAGCGTCATT
GTCCGGCGGC TACGCCGCGC GCTGGACGAA ACCGACCGTG ACAAGCCGCC CATAAACCGG
TGA
|
|---|
| Protein sequence | MSITIRFCGA ARTVTGSCYL FETRTGRFLV DCGLFQGQKT LKELNYGAFP FRPSAVDAVL
LTHAHIDHSG LLPKLLRDGF QGPIFATRGT IDLCSYMLPD AGSIQESEVA MLNRRNVARG
RPEVSPIYTQ ADAIASLQLF RPVDYETWTN VIPGVRARYW NAGHLLGSAS IEIEIAEEGR
SASALRVLAS GDIGPDEKLL QPNPEAPSHF DYVICESTYG DRIREATSSQ LRHERLAAEV
NAAAAARGAL VIPAFAVERT QELIVDLIDL MARGAIPAAP IFLDSPLAIR ATEVFRRHAA
SLDEDVDIER LLSSPHLRFT ETVEESKAIA KLSGFHIIIA ASGMCDAGRI RHHLKRWLCR
SNGTVLLVGY QAQGTLGRFL QEGATSVRIM GDEIRVKARI RRIDDYSGHA DANELARWIA
ARRPIERGLF LAHGEETAIA ALAERISGGV LPAAKIFQPV LDDIYELAAA SPTPLDAKHR
RRLEPEAVVK LDWHNDMSKL ILDINERIET AADARARSVI VRRLRRALDE TDRDKPPINR
|
|---|
| |