| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1429 |
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| Symbol | |
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| ID | 4021906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1592248 |
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| End bp | 1594932 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637961621 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_568567 |
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| Protein GI | 91975908 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0869668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGCTGA GGATTGGGAA GGCGGGCAGC GGGGCAGCGG GGGCTGCGGC TATGGCCGGA
CTGTTCGCGT CGATCAGCCT CGCGCAAGCT GCGCCCCAAT TCGAGCCCGG CAGCCAAGTC
GGTGGATTTG AGACCGAGTT GATCTGGGAG CTGCTGATCG GCGGCTTCGT CCTCGCGTCG
TTCACCAGCG CCGTCGCGCT GTGGGCGACC GCAATGTTGC GCAAGCAGCG CCGCGCCCAG
CGCCGCAAGA ACATACTGGT CAACTCGGTG CTGAACAAGC TCCAGCAGGG AGTCGTCATC
ACCGATGCCA ACGGCACTCT GGTGTTCTGC AACGACCGAT ATCTCGAACT CTACGGTCTT
CAGCGTTCAG ACGTACCGTG CGGCATCGCC AGCCACGACA TGCTGGCCTT GCGCCGCGCC
CGCGGCACGC TCGATCTCAG CAACGAGGAA TTTTACCGCC ACGCCGCGAC GCCCGAAGGC
TTCATCAGCG AGCTGCCGGA CGGCCGCTTC GTGCAGGTGA AGTTCTCGCA GCTTGCCAAT
GGCGGGATGA TCTCGACCCA TGACGATTGC ACTCAACTGC GGCGGGTGTC GAAGCAACTC
GCGACCACCA GCCAGTTCCT GGAGTCGGTG ATCGACAACA TTCCGGTCTG CGTCGCGGCC
AAGAGCATCG ATGACGGTCG CTACATCCTG GCCAACCGGG CGTTCGAGAA ATTGTCGCGG
TTGCCGCGCG AACAAATCAT CGGGAAGACT GCAGAGGACC TGTTTCCGCC GCGATCCGCC
GCCGTGATTC GTGATTCCGA CCGGGTCACG CTTGAATCCG GCAAGAATGG ATTCCGCTCC
GAACTGTCGA TCGAATTCGG CCAGCGCGAT GTTGTGCTGG CGACCGATCG CGTGGTGGCC
TTCAACGAAC GCAACGAGCC GGAATTCATC ATCGTGCTGT TCGAAGACGT CACCGAACGT
CAGATGCTGG CGCGGGAACT CGACAAGACC CGCAGGTTCC TCGAGCTGGT CGTCGACAAC
ATTCCGGTCG CGGTCACGGT TCAGAATGCC AGCAACGGCG CTTACCTGCT CGCCAATCGC
GGAGCCGAGG TCATTCTCAA TCGCCGGCGC GAAGACGCGA TCGGCCTCAC CTCCGGCGAA
ATCTTCAATG CCAAGGAAGC GCGGCTGATC GAGGAGCGCG ACCAGCTCGC GATCCACAAA
GGCGGGATGA TGGTCGAGGA ATATCCCATC AGCACCAAAA ACGGCCTTCG GCTGTTCGTG
ACCCGCCGCA TGACGGTGGC CGACGAGGCC GGCAATACCA ACTACCTGAT CAAGACCCAT
GCCGACGTCA CGGATCGCCG CCAGACCGAG GCGCGCATGG CGCACATGGC CTATCACGAC
GGCCTCACCG ACCTGCCGAA CCGCACTGCC TTCCTGAAGG CGTTGGCGCA GATGATCGAG
GCCTGCGATT GCACGGTGGA TCAGTTCGCG GTGTTGTCGG TCGATCTCGA CGGGCTCGCG
GAAATCAACG ATGTCTTTGG CCACGCGGTC GGCGACAAGC TTTTGATCGA GGTCGCGCGC
CGGATCGAAC GCGCCTCGCG CGGCGGCGTG GTGGCGCGGC TCAGCGGCGA CGAATTCGGC
CTGATCATCG ACGGGCCGCA GCCGCAGGCC GCCCACGCGC TCGCCGAGCG CGTGGCGGAG
GCGCTGGCCG ACGGCCTCGA GATCGACGGC AAGACGGTGC GGACCGGCGT CACCACCGGA
ATCGCGTTGT TCCCGCGCGA TGGAAAGGAC GCCGCCTCGC TGCTCGCCAA TGCCGGCGCC
GCGTTGTTCC GCGCCAAGGC GCGGGCGCGC GGTTCGGTCA GCTTGTTCGC GCCCGAAATG
GACATGCAGA TTCGCGACCG CAGGGCGCTG CATCAGGATC TGTCGAACGC GATCCGCAAC
GGCGAGTTGA CGTTGCACTA CCAGCCGCAG GCGGCGAGCA GCAAAAGCAT CGACGAGACC
GACGTCGTCG GCTTCGAAGC TCTGGCGCGC TGGCGGCATC CCACGCGCGG CTTCGTGCCG
CCCGGCGAGT TCATTCCGCT CGCGGAAGAG AGCGGTCTGA TCGTCGAGAT CGGCGAATGG
ATTCTGCGGG AGGCCTGCCG CGAAGCGGCG TCATGGCCAA AGCCGCTGCA GATCGCCGTC
AATCTGTCGC CGGCGCAGTT CCTCAATTCC GATCTGGTCG GCTTCATTCA CCAGGTGTTG
CTCGAGACCG GCCTGCAGCC GGGCCGGCTC GAACTGGAAA TCACCGAGGG TGTGCTGATC
GAGGATTTCG AGCGCGGCCT GGCGTTGCTG CGCCGGGTGA AGGCGCTCGG CGTTCGCGTC
TCGATGGACG ATTTCGGCAG CGGCTACTCG TCGCTGACCT ATCTGCAGGC GTTTCCGTTC
GACAAGATCA AGATCGACCG CGCCTTCATT ATGAATCTCG GCCGCAACGC GCAGTCGGCG
TCGATCGTCC GCGCGGTGAT CGGGCTCGGC CACGGTCTCG GCGTGTCGCT GGTCGCCGAG
GGCGTCGAGA CCCAGGAGCA ACTCGACTTC CTGGTCGACG AAGGCTGCGA CGCGGTGCAG
GGCTATCTGA TCGGAAGGCC GGCGCCGATC GATCAATTCC CCTGCATGGT CGGGCTCGCG
CCGATGCTCG ATGAAGTTCC CCGCCTCGCC CTGCAGGTCG GCTGA
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| Protein sequence | MVLRIGKAGS GAAGAAAMAG LFASISLAQA APQFEPGSQV GGFETELIWE LLIGGFVLAS
FTSAVALWAT AMLRKQRRAQ RRKNILVNSV LNKLQQGVVI TDANGTLVFC NDRYLELYGL
QRSDVPCGIA SHDMLALRRA RGTLDLSNEE FYRHAATPEG FISELPDGRF VQVKFSQLAN
GGMISTHDDC TQLRRVSKQL ATTSQFLESV IDNIPVCVAA KSIDDGRYIL ANRAFEKLSR
LPREQIIGKT AEDLFPPRSA AVIRDSDRVT LESGKNGFRS ELSIEFGQRD VVLATDRVVA
FNERNEPEFI IVLFEDVTER QMLARELDKT RRFLELVVDN IPVAVTVQNA SNGAYLLANR
GAEVILNRRR EDAIGLTSGE IFNAKEARLI EERDQLAIHK GGMMVEEYPI STKNGLRLFV
TRRMTVADEA GNTNYLIKTH ADVTDRRQTE ARMAHMAYHD GLTDLPNRTA FLKALAQMIE
ACDCTVDQFA VLSVDLDGLA EINDVFGHAV GDKLLIEVAR RIERASRGGV VARLSGDEFG
LIIDGPQPQA AHALAERVAE ALADGLEIDG KTVRTGVTTG IALFPRDGKD AASLLANAGA
ALFRAKARAR GSVSLFAPEM DMQIRDRRAL HQDLSNAIRN GELTLHYQPQ AASSKSIDET
DVVGFEALAR WRHPTRGFVP PGEFIPLAEE SGLIVEIGEW ILREACREAA SWPKPLQIAV
NLSPAQFLNS DLVGFIHQVL LETGLQPGRL ELEITEGVLI EDFERGLALL RRVKALGVRV
SMDDFGSGYS SLTYLQAFPF DKIKIDRAFI MNLGRNAQSA SIVRAVIGLG HGLGVSLVAE
GVETQEQLDF LVDEGCDAVQ GYLIGRPAPI DQFPCMVGLA PMLDEVPRLA LQVG
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