| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1411 |
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| Symbol | |
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| ID | 4021888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1578029 |
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| End bp | 1579927 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637961603 |
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| Product | peptidase M3B, oligoendopeptidase-like clade 3 |
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| Protein accession | YP_568549 |
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| Protein GI | 91975890 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1164] Oligoendopeptidase F |
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| TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.249086 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAAAG CTGTAACCTC CCGCACCGTC AAGACTTCCC GTAAGCCGTC GTCGCGCAAA
TCGGCGCCCG CCAAGTCGAC CAAGCCCGCC AGCAAGAAAT CCGCCTCCGC GGCGAGCCGG
AAGCCGGCCA AGCTGCCGGA ATGGAATCTG GCGGATCTGT ACCCGGCGAT CGATGCGCCG
CAGGTTGCCG CCGATCTCGA CCGGCTGGAT GCGGATTGCG CCTCGTTCGA AGCCGACTTC
AAGGGCAAGC TCGCCGAGGA GGCCGTAAAG GACGGCGGCG GCGCGTGGCT GGCTTCCGCG
GTCAGGCGCT ACGAGGCGAT CGAGGACCTC GCAGGAAGGC TCGGCTCCTA TGCGGGCCTC
GTCCATGCCG GCGACAGCGT CGATCCGGTC AAGTCGAAAT TCTACGGCGA CGTGTCCGAG
CGGCTGACCG CGGCGTCGGT GCATCTGCTG TTCTTCGCGC TGGAACTCAA CCGCGTCGAC
GACGAGGTGC TGGAGCGCGC GATGCAGACG CCCGAACTCG GCCACTACCG GCCGTGGATC
GAGGATCTGC GCAAGGACAA GCCGTATCAG CTCGAAGATC GCGTCGAGCA ACTGTTCCAC
GAGAAGTCGC AGACCGGCTA CGGCGCCTTC AACCGGTTGT TCGATCAGAC CATCTCCAGC
CTGCGCTTCA AGGTCGGCGG CAAGGAACAG GCGATCGAGC CGACGCTGAA CCTGTTGCAG
GACCGCACGC CTGCGAAGCG CAAGGCGGCG GCCGACGCTT TGGCCAAGAC CTTCAAGGCG
AATGAGCGCA CCTTCGCGCT GATCACCAAC ACGCTGGCCA AGGACAAGGA GATTTCCGAC
CGCTGGCGCG GCTTCGAGGA CGTCGCCGAT TCACGCCACC TCAACAACCG CGTCGAGCGC
GAGGTGGTCG ACGCGCTGGT CGCTTCGGTG CGCGGCGCCT ATCCGCGGCT GTCGCATCGC
TACTACAAGC TCAAGGCCGG CTGGTTCGGC AAGAAGAAGC TGCCGCATTG GGATCGCAAT
GCGCCGCTGC CGTTCGCGGC GACCGGCAGC ATCGCCTGGC CGGAAGCGCG CAATATGGTG
CTGACTGCCT ACAACGCGTT CTCGCCGGAG ATGGCGCGGA TCGCCGAGCG TTTCTTCACC
GATCGCTGGA TCGATGCGCC GGTACGTCCG GGCAAGGCGC CGGGCGCGTT CTCGCATCCG
ACCACGCCCT CGGCGCATCC CTATGTGCTG ATGAACTACC AGGGCAAGCC GCGCGACGTG
ATGACGCTCG CCCACGAACT CGGCCACGGC GTGCATCAGG TGCTCGCCGC CGGCAACGGC
GCGCTGATGG CGCCGACGCC GCTGACATTG GCCGAGACCG CCAGCGTGTT CGGCGAGATG
CTGACCTTCC GCCGTCTGTT GGCGCAGACC AAGAGCGCCA AGCAGCGCCA GGCGCTGCTC
GCCGGCAAGG TCGAGGACAT GATCAACACC GTGGTGCGGC AGATCGCGTT CTACTCGTTC
GAACGCGCGA TCCACACCGA GCGCCGGGGC GGCGAACTCA CCGCGCAGCG CATCGGCGAG
ATCTGGCTGA GCGTGCAGGG CGAAAGTCTG GGACCCGCGA TCGACATCCG TCCGGGTTAC
GAGCACTTCT GGATGTACAT CCCGCACTTC ATCCATTCGC CGTTCTACGT CTACGCCTAT
GCGTTCGGCG ACTGCCTCGT GAACTCGCTC TACGCGGTCT ACGAGAATGC CCAGGAAGGC
TTCGCCGATC GCTACCTCGC GATGCTCTCG GCCGGCGGCA CCAAGCATTA CTCCGAACTG
CTCGCGCCGT TCGGTCTCGA CGCCAAGGAC CCGACATTCT GGGACGGCGG TCTGTCGGTG
ATCGCCGGCA TGATCGACGA GCTGGAGGAG ATGGGGTAG
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| Protein sequence | MPKAVTSRTV KTSRKPSSRK SAPAKSTKPA SKKSASAASR KPAKLPEWNL ADLYPAIDAP
QVAADLDRLD ADCASFEADF KGKLAEEAVK DGGGAWLASA VRRYEAIEDL AGRLGSYAGL
VHAGDSVDPV KSKFYGDVSE RLTAASVHLL FFALELNRVD DEVLERAMQT PELGHYRPWI
EDLRKDKPYQ LEDRVEQLFH EKSQTGYGAF NRLFDQTISS LRFKVGGKEQ AIEPTLNLLQ
DRTPAKRKAA ADALAKTFKA NERTFALITN TLAKDKEISD RWRGFEDVAD SRHLNNRVER
EVVDALVASV RGAYPRLSHR YYKLKAGWFG KKKLPHWDRN APLPFAATGS IAWPEARNMV
LTAYNAFSPE MARIAERFFT DRWIDAPVRP GKAPGAFSHP TTPSAHPYVL MNYQGKPRDV
MTLAHELGHG VHQVLAAGNG ALMAPTPLTL AETASVFGEM LTFRRLLAQT KSAKQRQALL
AGKVEDMINT VVRQIAFYSF ERAIHTERRG GELTAQRIGE IWLSVQGESL GPAIDIRPGY
EHFWMYIPHF IHSPFYVYAY AFGDCLVNSL YAVYENAQEG FADRYLAMLS AGGTKHYSEL
LAPFGLDAKD PTFWDGGLSV IAGMIDELEE MG
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