Gene RPD_1397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1397 
Symbol 
ID4021874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1563365 
End bp1564234 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content62% 
IMG OID637961589 
Productamidohydrolase 2 
Protein accessionYP_568535 
Protein GI91975876 
COG category[R] General function prediction only 
COG ID[COG2159] Predicted metal-dependent hydrolase of the TIM-barrel fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.70619 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.985512 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAACC CCGACGACCT CGTCGCCATC GACATCCACA CCCACGCCGA GGAGCCCTGC 
GGCTCGCACC CCGACGACGG CTATGACGAT TTCCAGGTGC GGATGGCGGA GTATTTCGGC
TCGCCGAACA AGCATCCGCC GACCGTGCCG GAGACCGCGG CCTATTATCG CTCCAAGAAA
ATCGCGGCGG TGATCTTCCC GGTCGACGCC GAGCGCGAGA CCGGCTTTCG CCGCTACAAC
AACGACGAGA TGATCGAGAT CACGCGGCAG AACTCCGACG TACTGATTCC GTTCGCTTCG
ATCGATCCGC ACAAGGGCAA GCTCGGGGTG CGCGAGGCGA AGCGGCTGAT CGCCGATTAC
GGCATCAAGG GGTTCAAATT TCACCCGACG ATGCAGGGCT TCTATCCCAA CGATCGCCTC
GCTTATCCGC TGTATGAAGC GATCCAGGAA GGCGGCGCGA TCGCGCTGTT CCACACCGGC
CAGACCGGTG TCGGCTCCGG GATGCCGGGC GGCATGGGAA TGCGGCTGAA ATTCTCCAAC
CCGATCTACA TGGACGACGT CGCCGCTGAC TTCCCCGACA TGAAGATCAT CCTCGCGCAT
CCCTCCTTCC CATGGCAGGA GGAGGCGCTG TCGGTCGCGA CCCACAAGCC GAACGTCTAT
ATCGACCTGT CGGGCTGGTC GCCGAAATAC TTCCCGCCGA TCCTGGTGCG CTACATCAAC
GGCCTGTTGC AGGACAAGAT GCTGTTCGGC TCCGACTGGC CGGTGATCAC CCCGGACCGA
TGGCTCGCAG ACTTCGCCAA ACTCGAGATC CGCGACGAGA TTCGCCCGAA GGTGCTGAAG
CAGAACGCCC GGAAGCTGCT GGGAATCTGA
 
Protein sequence
MLNPDDLVAI DIHTHAEEPC GSHPDDGYDD FQVRMAEYFG SPNKHPPTVP ETAAYYRSKK 
IAAVIFPVDA ERETGFRRYN NDEMIEITRQ NSDVLIPFAS IDPHKGKLGV REAKRLIADY
GIKGFKFHPT MQGFYPNDRL AYPLYEAIQE GGAIALFHTG QTGVGSGMPG GMGMRLKFSN
PIYMDDVAAD FPDMKIILAH PSFPWQEEAL SVATHKPNVY IDLSGWSPKY FPPILVRYIN
GLLQDKMLFG SDWPVITPDR WLADFAKLEI RDEIRPKVLK QNARKLLGI