Gene RPD_1393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1393 
Symbol 
ID4021870 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1560386 
End bp1560934 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content57% 
IMG OID637961585 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_568531 
Protein GI91975872 
COG category[T] Signal transduction mechanisms 
COG ID[COG2202] FOG: PAS/PAC domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.959449 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCGTTC GCAGCCGGAC ATTGCCCGTG AAACAAGTCG TAACACCGAC CACCGTCGAA 
GTGTTCTTCG ACGCCGACGA CATCATTGTC TCCAAGACCG ACCTCAAAGG CCGGATCACC
TACGCCAATA AAGTATTCAC CGATATCTGC GGATACAGCG AAGCAGAGCT GATCGGCCAG
CCGCACTCGA TCTTGCGCCA TCCCGACATG CCGCGCTGCG TGTTCAAGCT GCTGTGGGAC
ACGCTGGCGG AAGGTCGCGA GATCTTCGCC TACGTCAAGA ACATGACTCG CAAGGGCGAT
TACTATTGGG TCTTCGCCCA TGTCACGCCG TCTTTCGACG CGAAGGGGCA GGTGATTGGA
TATCACTCCA ATCGCCGGGT GCCGGATCGC CGTGTCGTCG CCGCGCTGGC GCCGGTTTAC
GCCCAGTTGT GTGAGGTGGA ATCCCATCAT CGCAACGGCA AGGACGGTCT CGCCGCCGGC
TATCGGCATC TGATCGATTT CGTCAAAGCG AAAAATGTGT CCTATGATCA GTTCATCTTC
TCTGTCTAA
 
Protein sequence
MIVRSRTLPV KQVVTPTTVE VFFDADDIIV SKTDLKGRIT YANKVFTDIC GYSEAELIGQ 
PHSILRHPDM PRCVFKLLWD TLAEGREIFA YVKNMTRKGD YYWVFAHVTP SFDAKGQVIG
YHSNRRVPDR RVVAALAPVY AQLCEVESHH RNGKDGLAAG YRHLIDFVKA KNVSYDQFIF
SV