Gene RPD_1388 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1388 
Symbol 
ID4021865 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1556963 
End bp1557751 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content65% 
IMG OID637961580 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_568526 
Protein GI91975867 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAATC TCACCGGCAA AACCGCGGTC GTGACCGGAT CGACCTCGGG CATCGGGCTG 
GCCTATGCGC GCGCCTTCGC CAAGTCGGGC GCCAATGTGG TGCTGAACGG CATGGGCGAG
CCTGATGCGA TCGAGGCGGC GCGCAAGGCG ATCGAGACCG ACTTCGCGGT GAAGGCGCTG
TATTCGCCGG CCGACATGCT GAAGCCGGCG GAGATCGCCG AGATGATCAA GCTCGGCGAG
AAAACACTCG GCTCGGTCGA CATCCTGGTC AACAATGCCG GCATCCAGTT CGTCTCGCCG
GTCGAGGAGT TTCCGGTCGA CAAGTGGGAC GCGATCATCG CCATCAACCT GTCGTCGGCG
TTCCACGGCA TCCGCGCCGC GGTGCCCGGC ATGAAGAAGC GCGGCTGGGG CCGCATCATC
AACACCGCCT CGGCGCATTC GCTGGTCGCC TCGCCGTTCA AGTCGGCCTA TGTCGCCGCC
AAGCACGGCA TCGCCGGCCT GACCAAGACG GTGGCGCTGG AGCTCGCGAC CCATAAGATC
ACCTGCAACT GCATTTCGCC GGGCTATGTC TGGACTCCGC TGGTCGAGAA GCAGATCCCG
GATACGATGA AGGCGCGCGG CCTGACCAAG GATCAGGTGA TCAACGACGT GCTGCTGCAG
GCGCAGCCGA CCAAGCAATT CGTCACGTCC GAACAGGTCG CGGCGCTGGC CGTCTATCTG
TGCGGCGACG ACGCCAGCCA GATCACCGGC GCCAACCTGT CGATGGACGG CGGCTGGACC
GCGGCGTAG
 
Protein sequence
MANLTGKTAV VTGSTSGIGL AYARAFAKSG ANVVLNGMGE PDAIEAARKA IETDFAVKAL 
YSPADMLKPA EIAEMIKLGE KTLGSVDILV NNAGIQFVSP VEEFPVDKWD AIIAINLSSA
FHGIRAAVPG MKKRGWGRII NTASAHSLVA SPFKSAYVAA KHGIAGLTKT VALELATHKI
TCNCISPGYV WTPLVEKQIP DTMKARGLTK DQVINDVLLQ AQPTKQFVTS EQVAALAVYL
CGDDASQITG ANLSMDGGWT AA