| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1366 |
|---|
| Symbol | |
|---|
| ID | 4021843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 1536758 |
|---|
| End bp | 1537303 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637961559 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_568505 |
|---|
| Protein GI | 91975846 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCTCA CAGACTCTCT TCGGGACGAC ATTCTGGCGG CGGTGCCGAG CTTGCGTGCG
TTCGCAATTT CGCTCAGCGG AAATGGTGAT CGCGCCGACG ATCTGGTGCA GGAAACTCTG
CTGCGCGCGC TCGCCAACAT CGATTCGTTT CAGCCCGGCT CGAACCTTCC GGCGTGGCTG
TTCACGATTT TGCGCAATCT GTTTCGCTCC GACTACCGGA AACGGCGGCG CGAGGTCGAG
GATGCCGATG GCAGCTACGC CAAGACGCTG AAGTCGCAAC CGGGCCAGAA CGCGCATCTG
GAGTTCGAGG AATTCCGTGT GGCCCTGGAC AAGCTTCCGC AGGACCAGCG CGAAGCCCTG
ATCCTGGTCG GCGCCTCCGG CTTCTCCTAC GAAGACGCAG CCGCGATCTG CGGCTGTGCG
GTCGGCACCA TCAAGAGTCG CGTCAACCGC GCGCGTTCGA AGCTGAGTGC GCTTCTCTAT
GTCGATGGCG CGGAAGACTT CGGCCCTGAC AATACTGTGC GGGCCGTGAT CGGCGGAAAC
GGCTGA
|
|---|
| Protein sequence | MPLTDSLRDD ILAAVPSLRA FAISLSGNGD RADDLVQETL LRALANIDSF QPGSNLPAWL
FTILRNLFRS DYRKRRREVE DADGSYAKTL KSQPGQNAHL EFEEFRVALD KLPQDQREAL
ILVGASGFSY EDAAAICGCA VGTIKSRVNR ARSKLSALLY VDGAEDFGPD NTVRAVIGGN
G
|
|---|
| |