Gene RPD_1327 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1327 
Symbol 
ID4021804 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1494076 
End bp1494702 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content65% 
IMG OID637961520 
ProductNADH dehydrogenase subunit B 
Protein accessionYP_568466 
Protein GI91975807 
COG category[C] Energy production and conversion 
COG ID[COG0377] NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR01957] NADH-quinone oxidoreductase, B subunit 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.107913 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCTCC CACCCGCAAT TCCGCCAACG CCGGCCGATT CGATGTCGGT CGAAGAGCAC 
ATGGCGCGGA GCAATCTGTT CACCACGCTC GAGGACCTCA CCGCGTGGTC GCGCAAGCAC
AGCCTGTGGC CGTTCAATTT CGGACTGTCG TGTTGCTATG TTGAACAGGT TACCGTGCTG
ACGCCGGTGT ACGATCAGGC GCGCTTCGGC GCCGAGGTCA TCCGCGCCTC GCCGCGCCAG
GCGGATCTGC TGGTCGTGTC GGGCACCGTG TTTCACAAGA TGGCCGCGCC TCTGCTGCGA
CTGTACGAGC AGATGCGCGC ACCGCGCTGG GTGATTTCGA TGGGCGCCTG CGCCAATTCC
GGCGGCATGT ACGACATTTA CTCGGTGGTG CAGGGCGTCG ATCGTTTCAT TCCGGTCGAT
GTCTACATTC CCGGCTGTCC GCCGCGGCCG GAAGCGATGC TCGACGCGCT GATCATGCTG
CAGCAACAGA TCGGCAGCGA GCGCCGGCCG CTCGGCGTCA CCGTCGGCAA CACCGCCGGT
CTCGGCTTCG ACGCGCCGCG CCGGCGCGAC CAGCGTCGCG ACGAACGCAT GGCGCAGACC
CTTCTCGATC CCCCGGAGAA ATTGTGA
 
Protein sequence
MTLPPAIPPT PADSMSVEEH MARSNLFTTL EDLTAWSRKH SLWPFNFGLS CCYVEQVTVL 
TPVYDQARFG AEVIRASPRQ ADLLVVSGTV FHKMAAPLLR LYEQMRAPRW VISMGACANS
GGMYDIYSVV QGVDRFIPVD VYIPGCPPRP EAMLDALIML QQQIGSERRP LGVTVGNTAG
LGFDAPRRRD QRRDERMAQT LLDPPEKL