| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1276 |
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| Symbol | |
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| ID | 4021753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 1439350 |
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| End bp | 1440462 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637961469 |
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| Product | histone deacetylase superfamily protein |
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| Protein accession | YP_568415 |
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| Protein GI | 91975756 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.296162 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACAG GATATCTTTG GAATACCCTC TATGGCTGGG TCGACACCGG AACCGGGAGT
CTTGCCGCGG CCAATCTCGC CGAGCGGATG CAGCCGATCT CGCATCATCT CGCACATTCC
GACACCAAGC GTCGGTTTCA TGAGCTCGTC TCCGTATCGG GGTTGCGGGA TCACTTGGTC
GATGTCGTCG CCCGGCCTGC GACCGATGCC GACATCCTGC GGGTGCATAC CGAAGAACAT
CTGAGCATCA TCAAGGAAAT AAGTGCACGG CCGACCGGAG GCATCGCCGG CGATGGTGTG
ACGATGCTGG GCAATGGCGG TCTCGACATC GCCCTGCTGT CGGCGGGCGG CGCGATCGAA
CTGGTGAAAC AGGTGGTCGC GGGCGAGCTG CGCAACGGAT ATGCGTTGGT CAACCCGCCC
GGTCACCATG CCCCGCGCAA TCAGGCGATG GGATTCTGCA TCTTCAACAA TACCTCGGTT
GCCGCGGCCT ATGCCCGCAA CGTCCTCGGC CTGGACCGGG TCGCGATCGT GGATTGGGAC
GTCCACCACG GCAACGGCAC GCAGGACATC TGGTGGACCG ACCCTTCGGT GCTGACGATT
TCGATTCATC AGCATTTGTG CTTCCCCGCC AATATGGGCT TCGTGACCGA GCGCGGCGAA
GGCGATGGCC ATGGCTACAA CCTGAACATC CCGTTGCCTC CGGGAAGCGG CAACGCGGCG
TATCAGCACG CCTTCGAGCG AGTAGTGATT CCGGCGCTGG AAGCCTACCG GCCACAGCTG
ATCATCGTCG GGTCTGGCTT CGACGCCAGC ATCCTCGATC CGTTGGCGCG GATGATGGTG
ACCGCGGCCG GCTTCCGCAA GCTCGCGCGC ATGGTGATCG ACTGCGCCGA TCGGATTTGC
GGCGGCAAGA TCGCCTGCGT GCAGGAGGGT GGATACAGCC CGCATTATCT GCCGTTCTGC
GGCCTGGCGG TGATCGAGGA ATTGGCCGAG GTCAGGCTGC TCGACGATCC GTACCAGGGT
TTCATCTCGA CCATGGGCGG CGACACCTTG CAGCAGCATG AGCGCGAATG GATCGAGAAC
GCGGCCGTGC TGGTCAAGGA TATCACCTGC TGA
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| Protein sequence | MTTGYLWNTL YGWVDTGTGS LAAANLAERM QPISHHLAHS DTKRRFHELV SVSGLRDHLV
DVVARPATDA DILRVHTEEH LSIIKEISAR PTGGIAGDGV TMLGNGGLDI ALLSAGGAIE
LVKQVVAGEL RNGYALVNPP GHHAPRNQAM GFCIFNNTSV AAAYARNVLG LDRVAIVDWD
VHHGNGTQDI WWTDPSVLTI SIHQHLCFPA NMGFVTERGE GDGHGYNLNI PLPPGSGNAA
YQHAFERVVI PALEAYRPQL IIVGSGFDAS ILDPLARMMV TAAGFRKLAR MVIDCADRIC
GGKIACVQEG GYSPHYLPFC GLAVIEELAE VRLLDDPYQG FISTMGGDTL QQHEREWIEN
AAVLVKDITC
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