| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1273 |
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| Symbol | |
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| ID | 4021750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1435147 |
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| End bp | 1437534 |
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| Gene Length | 2388 bp |
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| Protein Length | 795 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637961466 |
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| Product | pseudouridine synthase Rsu |
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| Protein accession | YP_568412 |
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| Protein GI | 91975753 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.897048 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCGCG ACACCGATAA AAACAACGCC TCCGCGCGGG GCCGCCGCGA TCGACCCGGC
GGAGGCAAGA CGTCTTCGGG CGGTAAAGGC GGTTTCGGGG GCAAAGGCGG CTTTGGCGGC
AAAAGCGCAG GCGGCGGCAA AGGGCGTTCC GGAGCGGCCC GCGGCCCCGA GAAGAAATTC
GCCAAACGCG GCGAGGGGAC CTTCGAGGCC CGCGCCGACA AGCCCTTCGC CAAGAAAACC
TTCGGCGGCG ACGCCAAGCG CGCGTTCGGC GGCGAGGGCA AGCGGCCTTA TGTGAAGCGC
GACGGCGCAG CCCCGCGCCG CGATTTCGCC GATCGGCCGC GCCGCGACGA TGGCGACGCG
CCGCGTCCGC GCTTCAACCG CGACGAGCGC CCCGCGCGCA GCGGCGGCGA TCGCCCGGAA
CGCGGCCCGC GCAAGGAGTT CGGCGAAAAG CGCGCATTCG CGCCCCGCGA GGGCGGCGAG
AAGCGCCCCT ATACGCCGCG ACCGCCGCGC GACGACCGCG GCGGCGATCG GCCGTTCAAA
CGCGACGATC GCGCCCCGCG GCGCGACCGC GGCGACGACG CCCGCCCGGC AGGGCGGTTC
GGCGACAAGA AATTCGGTGA CAAGAAATTC GGCGAGAAGC GGCCTTACAC ACCGCGTGAG
GGTGGCGACA AGCGTCCGTA TACGCCCCGC GAGGGCGGTG AGAAACGCCC CTATACGCCG
CGTGAAGGCG GCGAAAAGCG GCCCTATGCA GCCCGCGAGG GTGGCGAGAA GCGTCCGTAT
ACGCCCCGTG ACGGTGGCGA GAAGCGCTCT TACGCGCCCC GTGAGGGCGG CGACAAGCGG
CCCTATACCC CGCGCGGCGA GGGCTTCCGC AAGGATGGCG AGCGGTCGCG GCCCACAGGG
GATCGCCCGT TTGGCGCCCG CCCGTCGCGT GACGGCAAGT TCGGCGGCGA CAAGAAATTC
GGCCGCGGCG CGCCGGATCG TGGCCCGCGC AAGGATTTCG GCAGCCGTCC CGATCGCGGC
GGCGACCGCG GCGACGCCAA GCCTTGGCAG AAGCGCGACG GCGACTCCGC CGAGCGCGGG
CGCAGCTTCG ACAAGCCGCG GTTCGACAAG CCGCGCGAGG AACGTGGCGG CGATCGCCCG
CGATTTTCGC GCGACGATCG TCCCAAATTC GAGCGCCGCG AGCGCACCGG CGACTGGCAC
GAGCATCCGC GCAACGAAGG CCCTTCGTCG GATCGTCCAC GCAGCCGGGA CAATGGCGAG
CGCGGCTTCG ACCGGCCGCG CCGTGAAAAC GAGGACGAGA GCAAGATATT CGCCAAGCGC
CCTGCCTTTG GCGGCCGCGG CGCCTATCGC GAGCGTCCCA AAACCGACCG TTCGAAGACC
GAGCGGCGCG CCGCTCCGGC CCCGGCCAAG GCCGACAAGG CCGGCGACCG CATCGCCAAG
GTAGTCGCCC GCGCCGGCCT GTGCTCGCGC CGCGACGCCG AGGCCTGGAT CGTCGAGGGC
CGCGTCGCGG TCAACGGCCG CGTCATCGAT AGTCCGGCGC TCGACGTCAC CTATTCGGAC
GTCATCACCG TCGACGGCAA GCCGTTGCCG GAGCGCGAGC GCACCCGGCT GTTTCTGTAT
CACAAGCCGC GCGGCCTGAT GACCACCCAC GCCGACCCCG AGGGCCGGCC GACGGTGTTC
GACAATCTGC CCGAAGACCT GCCGCGCCTG ATTTCGATCG GCCGGCTCGA TTTCAACACC
GAGGGCCTGT TGCTGCTCAC CAATGACGGT GGGCTGGCGC GTGCGCTCGA ACTGCCGGAG
ACCGGCTGGC TGCGGCGCTA TCGCGTCCGC GCGCATGGCG AAGTGACCCA GGCGCAGCTC
GATCAGCTCG CCAGCGGCGT CGAGGTCGAC GGCGTCAAAT ACGGTCCGAT CGAGGCCAAG
CTCGAACGCG ACCAGGGCGC CAATGTCTGG CTGGTGTTCG CGATCCGCGA AGGCAAGAAC
CGCGAAGTCC GCAACGTGCT GGCGCATCTC GGGCTCGAGG TGAACCGGCT GATCCGCGTT
TCCTACGGCC CGTTCCAGCT GCTCGAGATC GAGGAAGGCC AGGTCGAGGA GGTCAAGACG
CGGGTGCTGC GCGAGCAGCT CGGCGAGAAG ATCATCAAGC TCGCCGAGGC CGATTTCGGC
GGGCCGTCGC CGAGCGAGAC GCGGCCGAAG CCGCGCCCGG GCAAGCCCGT CGCCGCCGAG
GACGGCCCCG CGCCGAAGAA GAAGGCCGTG GTCAAGCGCG GCGCCGTCGA GGACCGCAAG
GGCCGCAAGG TCAAGGTCGA ACGCACCGGC AGCGGCGACC GCGACCCCTC CCGCGGCCCC
GCCCGCCGCT ACCACGGCAA GCGCGAACCG GCACCTCGCG AGGACTAG
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| Protein sequence | MPRDTDKNNA SARGRRDRPG GGKTSSGGKG GFGGKGGFGG KSAGGGKGRS GAARGPEKKF
AKRGEGTFEA RADKPFAKKT FGGDAKRAFG GEGKRPYVKR DGAAPRRDFA DRPRRDDGDA
PRPRFNRDER PARSGGDRPE RGPRKEFGEK RAFAPREGGE KRPYTPRPPR DDRGGDRPFK
RDDRAPRRDR GDDARPAGRF GDKKFGDKKF GEKRPYTPRE GGDKRPYTPR EGGEKRPYTP
REGGEKRPYA AREGGEKRPY TPRDGGEKRS YAPREGGDKR PYTPRGEGFR KDGERSRPTG
DRPFGARPSR DGKFGGDKKF GRGAPDRGPR KDFGSRPDRG GDRGDAKPWQ KRDGDSAERG
RSFDKPRFDK PREERGGDRP RFSRDDRPKF ERRERTGDWH EHPRNEGPSS DRPRSRDNGE
RGFDRPRREN EDESKIFAKR PAFGGRGAYR ERPKTDRSKT ERRAAPAPAK ADKAGDRIAK
VVARAGLCSR RDAEAWIVEG RVAVNGRVID SPALDVTYSD VITVDGKPLP ERERTRLFLY
HKPRGLMTTH ADPEGRPTVF DNLPEDLPRL ISIGRLDFNT EGLLLLTNDG GLARALELPE
TGWLRRYRVR AHGEVTQAQL DQLASGVEVD GVKYGPIEAK LERDQGANVW LVFAIREGKN
REVRNVLAHL GLEVNRLIRV SYGPFQLLEI EEGQVEEVKT RVLREQLGEK IIKLAEADFG
GPSPSETRPK PRPGKPVAAE DGPAPKKKAV VKRGAVEDRK GRKVKVERTG SGDRDPSRGP
ARRYHGKREP APRED
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