| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1268 |
|---|
| Symbol | |
|---|
| ID | 4021745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1429890 |
|---|
| End bp | 1430849 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637961461 |
|---|
| Product | extensin-like |
|---|
| Protein accession | YP_568407 |
|---|
| Protein GI | 91975748 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3921] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.272059 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.448053 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGATCG CGGTGGCGGT GGCGCTATGC GCGCCGCCCG CGCTGGCGCG GGACAAGATA
CCGTTGCCGA AGCCTCGGCC GGCCGAGGCG CCTGCGCCCG ATGACGAGCG CGCGGCCGAC
AAGCCGGAGT CCGACGCGCC GCCGCAGGCA GAGGCGGCCA AGCCGCCGCC CAGCCCCGAG
TCGAAGCCGC CCTCGGCGTG CCGGCTGGCG CTGACCGATG CGATTGCGGT GGCGCCCAGC
ATCCCCGACA TCACCGGTCC CGGCAGTTGC GGCGGCCCCG ATCTGGTCCG GCTCGAAGCG
ATCGTTCTGC CCGACGGCAG CCGCGTTGCG GTGACGCCTG CGGCGACGTT GCGCTGCCAC
ATGGCCAGCG CGCTCGCCGC CTGGGTCCGC ACCGACATCG CGCCGCTCGC GGCCTCGTTC
GACCAGCGGC TTGCCGCGCT CGACAATTTC GACTCCTACG ATTGCCGCGG CCGCAACCGC
GTGTTCGGCG CGAAGCTGTC TGAGCATGGC CGCGCCAATG CGCTCGATCT GCGCGGCCTC
AAGCTCGCCA ATGGCCGGAT GCTGTCGCTG ACCGATCGCG CGACGCCGCG CGCGGTGCGC
GAGAGCGTGC TGCAATCGGT GTGCGCCCGG TTCTCCACCG TGCTCGGCCC GGGCTCGGAC
GGCTACCACG AGGACCACAT CCATCTTGAT CTGGCCGAGC GGCGCGGTGG CTACAAGATC
TGCCAATGGG AGGTGTGGGA GCCGCTGCCC GCGATCGCGC CGCTGTTGCC GGCGGCGCGG
CCGGCCGAGG CGCCGCCGCG CGAGGTCGCC GATCAGCCCG CGGACCGGGA GCAGGAGCGC
GCCGCGCCGC AGCAAGGCGA TCCGGAGCAG GCCGAGCAGC GCGAAGCCGA GCAGGCGCCT
GCGCCGCCGC CGGCGAAGCA GGCGACAAAG AAAAGGCGCC GGACTGACCA GCGCCTTTGA
|
|---|
| Protein sequence | MLIAVAVALC APPALARDKI PLPKPRPAEA PAPDDERAAD KPESDAPPQA EAAKPPPSPE
SKPPSACRLA LTDAIAVAPS IPDITGPGSC GGPDLVRLEA IVLPDGSRVA VTPAATLRCH
MASALAAWVR TDIAPLAASF DQRLAALDNF DSYDCRGRNR VFGAKLSEHG RANALDLRGL
KLANGRMLSL TDRATPRAVR ESVLQSVCAR FSTVLGPGSD GYHEDHIHLD LAERRGGYKI
CQWEVWEPLP AIAPLLPAAR PAEAPPREVA DQPADREQER AAPQQGDPEQ AEQREAEQAP
APPPAKQATK KRRRTDQRL
|
|---|
| |