| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1224 |
|---|
| Symbol | |
|---|
| ID | 4021700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1384273 |
|---|
| End bp | 1387356 |
|---|
| Gene Length | 3084 bp |
|---|
| Protein Length | 1027 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637961416 |
|---|
| Product | pyruvate phosphate dikinase |
|---|
| Protein accession | YP_568363 |
|---|
| Protein GI | 91975704 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0574] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase |
|---|
| TIGRFAM ID | [TIGR01828] pyruvate, phosphate dikinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.516679 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAG CCGCTTCCAA GACCAAGAAG ACCCTCAAAT CTTCAGCCTT AAAGTCTTCG
GCATCCAAGT CTTCGGCATC TAAGTCTTCG GCACCAAAAT CTTCGGCGTC CAAGTCTCAG
GCGTCCAAGT CTTCGGCGTC CAAGTCTTCG GCGCCGAAGT CCTCGGCGCC TGCGCGTGGC
AAGACCGCCG CGCCGAGCGC CCGCAAGGCG CTGACGAAGA CTCCGCCGAA GCAGGCTCCG
AAGGCCGCCA AGAAGGCTGT TAGCAAGCCG GTCGCCAAGT CGGTGGCAAA GCCGTCCGCG
AAGAGCGTCG CCAAGAGCAA GCCGGTGGCG AAGGCCGCCA GCAGCAAGAC CGCGGCGAAG
GCCGCCAGCA GCAAGACCGC GGCGAAGGCA GTCAGCGCGC CGAAGGCCGG CAAGTGGGTC
TACACCTTCG GCGACGGCAA GGCCGATGGC AAGGCGAGTA TGCGCGACCT GCTCGGCGGC
AAGGGCGCCA ACCTCGCCGA GATGGCCAAT CTCGGCCTGC CGGTGCCCCC GGGCTTCACC
ATTCCGACCT CGGTCTGCAC CTACTTCTAC GCCAACGACA AAACCTATCC GAAGGAGCTG
AAGGCGCAGG TCGAGCGTTC GCTGGAATAT GTCGGCAAGC TGACCGGCAA GCGCTTCGGC
GATCCGAAGA ATCCGTTGCT GGTTTCGGTC CGATCCGGCG GCCGTGCGTC GATGCCGGGC
ATGATGGACA CCGTGCTCAA CCTCGGGCTC AACGACGAGA CCGTCGAGGC CGTGGCGCTG
ATGTCCGGCG ATCGCCGCTT CGCCTATGAC AGCTATCGCC GCTTCATCAC GATGTATTCC
GACGTGGTGC TCGGGCTCGA GCATCATCAT TTCGAGGAAA TCCTCGATAG CTACAAGGAC
AGCAAGGGCT ACACGCTCGA CACCGACCTC ACTGGCGACG ACTGGGTCCT GCTGGTCGGC
CAGTACAAGG ACGCCGTCGC GCGCGAGATC GGTCAGGACT TCCCGCAGGA TCCGAACGAT
CAGCTTTGGG GTGCGATCGG CGCGGTGTTC TCGTCCTGGA TGAATGCGCG CGCGGTGACC
TATCGCCGTC TGCACGACAT TCCGGAATCC TGGGGCACCG CCGTCAACGT GCAGGCGATG
GTGTTCGGCA ACATGGGCGA GACCTCGGCC ACCGGCGTCG CCTTCACCCG CAATCCGTCG
ACCGGCGAGA GCCGGCTGTA CGGCGAGTTC CTGATCAATG CGCAAGGCGA GGACGTCGTC
GCCGGCATCC GCACCCCGCA GGACATCACC GAGTACGCGC GCCTCGAATC CGGCTCCGAC
AAGCCGTCGA TGGAAGTCGC GATGCCCGAC GCCTTCCAGG AACTGACGCG GATCTACACC
CTGCTGGAAA AGCACTACCG CGACATGCAG GACATGGAAT TCACCGTCGA GCAGGGCAAG
CTGTGGATGC TGCAGACCCG CGGCGGCAAG CGCACCGCCA AGGCGGCGTT GCGGATCGCG
GTCGAACTCG CGCATGAAGG CCTGATCAGC AAGATCGACG CTGTGGCCCG TATCGAGCCG
AGTTCGCTCG ACCAGCTGCT GCATCCGACG ATCGATCCGC ACGCCAAGCG CGACGTCATC
GCGACCGGCC TGCCGGCGTC GCCGGGCGCC GCTTCGGGCG AGATCGTGTT TTCCTCGGAC
GAAGCCGCCA AGCTCCAGGC CGACGGACGT AAGGTCATTC TGGTCCGGAT CGAGACCAGC
CCCGAAGACA TTCACGGGAT GCACGCCTCT GAAGGCATTC TCACCACCCG CGGCGGCATG
ACCTCGCACG CCGCGGTGGT CGCGCGCGGC ATGGGCAAGC CCTGCGTGTC CGGCAGCGGC
GCGATCCGCG TCGATTATGG CCGCGGCACG ATGACGATCG GCGCGCGCAC CTTCAAGACC
GGCGACATCA TCACCATCGA CGGCTCGATC GGCCAGGTGC TGGCCGGCCG GATGCCGATG
ATCGAGCCCG AATTGTCGGG CGATTTCACC ACGCTGATGG GCTGGGCCGA TCAGGTCCGC
AAGCTCAAGG TCCGCGTCAA CGCCGACACC CCGGTCGATG CGCGCACCGC GATCAAGTTC
GGCGCCGAAG GCATCGGTCT GTGCCGCACC GAGCACATGT TCTTCGAGGA GACCCGCATC
CGCACCGTAC GCGAGATGAT CCTCGCCGAG GACGAGCAGT CGCGCCGCGC GGCGCTGGCC
AAGCTGCTGC CGATGCAGCG CGCGGACTTC GTCGAGCTGT TCGAGATCAT GAAGGGCCTG
CCGGTCACGA TCCGGCTGCT CGATCCGCCG CTGCACGAGT TCCTGCCGCA CAGCCACGCC
GAAGTCGAGG AAGTCGCGCG TGCGATGAAC GCCGATCCGC GACGGCTCGC CGATCGCGCC
CGCGATCTCG CCGAGTTCAA TCCGATGCTC GGCTTCCGCG GTTGCCGTCT GGCGATCGCC
TATCCGGAGA TCGCCGAGAT GCAGGCCCGC GCCATCTTCG AGGCCGCGGT CGAGGCCGAG
AAGCGCACCG GCGAAGCGGT CGGGCTCGAA GTGATGGTGC CGCTGATCGC GACCCGTGCG
GAGTTCGACC TGGTCAAGGC CCGGATCGAC GCCACCGCGC ATGCGGTGTC GCGTGAGACC
GGAGCCCAAC TCAAGTACCA GGTCGGCACC ATGATCGAGC TGCCGCGCGC CTGCCTGATG
GCTGGCGACG TCGCCGAGAC CGCCGAGTTC TTCTCGTTCG GCACCAACGA CCTGACCCAG
ACCACCTACG GCATCAGCCG TGACGACGCC GCGAGCTTCC TCGGCACCTA TATCGAGAAG
GGCATCTTCG CGGTCGATCC GTTCGTGTCG GTGGATCGCG ACGGCGTCGG CGAACTGGTG
AAGATCGGCG TCGAGCGCGG CCGCAAGACC CGGCCGGACC TCAAGGTCGG CATCTGCGGC
GAGCACGGCG GCGATCCCGC CTCGGTCGCC TTCTGCCACG AGGTCGGTCT CAACTACGTG
TCGTGCTCGC CCTATCGCGT GCCGATCGCG CGGCTGGCGG CGGCGCAGGC CGCGCTCGGC
AAGGCGGCTG CCGGCCAGGC CTGA
|
|---|
| Protein sequence | MAKAASKTKK TLKSSALKSS ASKSSASKSS APKSSASKSQ ASKSSASKSS APKSSAPARG
KTAAPSARKA LTKTPPKQAP KAAKKAVSKP VAKSVAKPSA KSVAKSKPVA KAASSKTAAK
AASSKTAAKA VSAPKAGKWV YTFGDGKADG KASMRDLLGG KGANLAEMAN LGLPVPPGFT
IPTSVCTYFY ANDKTYPKEL KAQVERSLEY VGKLTGKRFG DPKNPLLVSV RSGGRASMPG
MMDTVLNLGL NDETVEAVAL MSGDRRFAYD SYRRFITMYS DVVLGLEHHH FEEILDSYKD
SKGYTLDTDL TGDDWVLLVG QYKDAVAREI GQDFPQDPND QLWGAIGAVF SSWMNARAVT
YRRLHDIPES WGTAVNVQAM VFGNMGETSA TGVAFTRNPS TGESRLYGEF LINAQGEDVV
AGIRTPQDIT EYARLESGSD KPSMEVAMPD AFQELTRIYT LLEKHYRDMQ DMEFTVEQGK
LWMLQTRGGK RTAKAALRIA VELAHEGLIS KIDAVARIEP SSLDQLLHPT IDPHAKRDVI
ATGLPASPGA ASGEIVFSSD EAAKLQADGR KVILVRIETS PEDIHGMHAS EGILTTRGGM
TSHAAVVARG MGKPCVSGSG AIRVDYGRGT MTIGARTFKT GDIITIDGSI GQVLAGRMPM
IEPELSGDFT TLMGWADQVR KLKVRVNADT PVDARTAIKF GAEGIGLCRT EHMFFEETRI
RTVREMILAE DEQSRRAALA KLLPMQRADF VELFEIMKGL PVTIRLLDPP LHEFLPHSHA
EVEEVARAMN ADPRRLADRA RDLAEFNPML GFRGCRLAIA YPEIAEMQAR AIFEAAVEAE
KRTGEAVGLE VMVPLIATRA EFDLVKARID ATAHAVSRET GAQLKYQVGT MIELPRACLM
AGDVAETAEF FSFGTNDLTQ TTYGISRDDA ASFLGTYIEK GIFAVDPFVS VDRDGVGELV
KIGVERGRKT RPDLKVGICG EHGGDPASVA FCHEVGLNYV SCSPYRVPIA RLAAAQAALG
KAAAGQA
|
|---|
| |