Gene RPD_1194 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1194 
Symbol 
ID4021670 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1350963 
End bp1354427 
Gene Length3465 bp 
Protein Length1154 aa 
Translation table11 
GC content70% 
IMG OID637961386 
Productchromosome segregation protein SMC 
Protein accessionYP_568333 
Protein GI91975674 
COG category[D] Cell cycle control, cell division, chromosome partitioning 
COG ID[COG1196] Chromosome segregation ATPases 
TIGRFAM ID[TIGR02168] chromosome segregation protein SMC, common bacterial type 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTCA CGCGTCTCCG CCTTCACGGC TTCAAGTCGT TTGTCGAGCC CACCGATTTC 
ATGATCGAGC CGGGTCTGAC CGGCGTGGTC GGGCCGAATG GCTGCGGCAA GTCCAATCTG
GTCGAGGCGC TGCGCTGGGC GATGGGCGAG ACCTCGCACA AATCGCTGCG CGCCGCCGAC
ATGGACGCGG TGATCTTTGC GGGTTCGGGC AATCGGCCGT CGCGCAACCA CGCCGAAGTG
GTGATGTCGA TCGACAATTC CGATCGCACC GCGCCGGCGG CGATGAACGA TTCCGAGATT
CTCGAAATCT CCCGCCGGAT CGAGCGCGAG GCCGGCTCGC AATATCGCAT CAACGGTCGC
GAAGTGCGCG CCCGCGACGT GCAGCTGCTG TTCGCCGACG CCGCCACCGG CGCGCGCTCG
CCGGCGCTGG TCCACCAGGG CAAGATCGGC GAAATCATTC AGGCCAAGCC CGAGCAGCGC
CGCCGCGTGC TGGAAGACGC CGCCGGCGTC GCCGGCCTGC ACGCCCGCCG CCACGAGGCC
GAGCTGCGGC TGAAGGCGGC CGAAACCAAT CTCACTCGCG TCGAGGACGT GATCGGCCAA
TTGTCGACCC AGGTCGACGG GCTGAAGAAG CAGGCCCGAC AGGCGATCCG CTTCCGGGAC
GTCGCCGCCA AGGTCCGCAA GACCGAGGCG ATGCTGTATC ATCTGCGCTG GCGCGACGCG
CAGTCCGAAG TCGGCGCCGC CGCGCAGGTG CACGATCTCG GCGTGCGCGA ACTCGCCGAA
CGCACCCGCG AGCAGGCCGA GGCCGCCCGC ATCCAGGCCG ACCGCGCCTC CGAATTGCCC
GGCCTGCGCG AGGCCGAGGC CCGCGCCGCC GCCGGTCTGC AGCGGCTGAT CAACGCCCGC
GAATTGCTCG ACCGCGAGGA AGCCCGCGCC AAGGAGCGCG TCGCCGAGCT GGAGCGCCGG
CTGACGCAGT TCTCGGCCGA CGTCGAGCGC GAGCAGCGCC AGTCGATCGA CGCCGACGCC
GCTTTGGAAC GGCTCGAAAC CGAAGATATC GAGCTGCGCG AAGAGATCAT GGAGCGGGTC
GAGAAGCGCA GCGGCGTCGA CGAGCGCGTC GGCCTGGCCG AGGAAGCGCT CGGCGAGGCC
GAGCGGCTGT TCGCCGAACT CACCACCCAG CTCGCGCAGC TCACCGCGCG GCGCAATCAG
TTCGAACAGG CGGTGCGCAG CCATCGCGAC CGGCTGGCGC GGCTCGACAA CGACATCCGC
AACGTCGAAG CCGAAGTCGA CAAGCTCACC CGGGAAACCA GCGGCGCCGG CGATGTCGAC
GAGCTGGCCG AAGCGGTGGC GATGGCGCAG GAGACGCTGG CCGAACTCGA ATCCTCGGTA
CAGAACGCCG AGGCCGCGCA TATCAGCGCC CGACAGAAGC TGGACGGCTC GCGCGCGCCG
CTGACCGAGG CCGACAAGCG GGTGCAGCGG CTCGAAACCG AAGCCAAGAC GATCTCCAAG
ATCCTCAACG GCGAGACCAA GAATCTGTGG CCGCCGATCA TCGACGGCAT CACCGTCGCC
AAGGGCTACG AGAAAGCGAT CGGCGCGGTG CTGGGCGACG ATCTCGACGC GCCGGTCGAT
CCGAGCGCGC CGATGCGCTG GACCGATGTC GGCGTGCAGG CCGACGATCC GGCCCTGCCC
GAGGGCGTCG AAGCGCTGAG CCAGCACGTC AATGCGCCGC CGGAGCTCAA GCGCCGCCTC
GCGCAGATCG GCGTGGTCGC CAAGGAGCGC GGCGCCGAAC TGGTCGGGCA GCTCAAGACC
GGCCAGCGGC TGGTGTCGCT CGACGGCGAC GTCTGGCGCT GGGACGGTTT CGTCGCCTCG
GCGCACGCGC CGACCGGCGC GGCGCGCCGC CTCGCCGAAC GCGCCCGCCT GGTCGACATC
GAGAACGACC TCGAACAGGC GCGGATCGAC GCCGCCGCCA AGCGCGAAGC GCTGGAGATG
GCCGAGGCCG AGCTGCGCAA CGCCGCCGCG GCCGAAACCG CAGCGCGCGA GAGCCTGCGC
GGCGCCCGTC GCGAGGTCGA TGCCGCGCGC GAGCGCCATG CCGCCGCCGA ACGCGAGATC
AACCGCCACG CCGCGCGCCG CTCGGCGCTG ACCGAGGCGC AGTCGCGCCT CGCCGCCGAC
CGCCTCGAGG CGGAAATGGC CTACGAGACC GCGGAGAACG CGCTGGCCGA GCTGGCGCCG
AACGACGATT CCGAGCAGCG GCTCGCCGCC GTCCGCAACG ATATCGAGAA CCATCGCCGC
AACGCCGCCC AGGTTCGCGC CGAGGCGCAG GCGCTGGCGC GCGAGGCCGA ACTCGCCGAC
AAGCGGCTGC AGGCGATCGT CGCCGAGCGC CACGAATGGA ACAAGCGCAA GCAGAGCGCG
GCGTCGCAGA TCGCGACCGT CGAAGAGCGC CTCGCCGAGC TGACCGCCGA GCGCGCCGAG
CTCGACAATG CGCCCGCGGT GTTCGCCGAG AAGCGCAGCG CGGTGATCAC CGAGATCGAA
TACGCCGAGA CCGACCGCCG CGCCGCCGCC GACGCGCTCG CCACCGCCGA ACAGGCGATG
GCCGACACCG ATCGCTCGGC CAAGGCGACA CTCGAACATC TGTCCAGCGC GCGCGAGGCC
TGCGCCCGCG CCGAGGAGCG GATGGAAGCG GCCCGCCGAA GGCTCGAGGA CGTCGAGCGC
GAGATCCGCG ACATGCTCGA GGTCGAGCCG CAGGCCGCCG CCTCGCTCGC CGAGGTCCAG
GAAGGCGTCG AGCTGCCGGC GCTGACCGAG ATCGAGGACA ATCTCGAAAA GCTGCGTCGC
GACCGCGAGC GGCTCGGCGC GGTCAATCTG CGCGCCGAAG AAGAACTGAA CGAGGTCGAG
ACCCAGCACG GCTCGCTCGC CGCCGAGCGC GACGATCTGG TCGAGGCGAT CAAGAAACTG
CGCACCGGCA TCCAGAGCCT GAACAAGGAA GCGCGCGAGC GGCTTCTGGC GTCGTTCGAG
GTCGTCAACG GCCACTTCAA GCGGCTGTTC ACCACTCTGT TCGGCGGCGG CGAGGCCGAG
CTGAAGCTGA TCGAAAGCGA CGACCCGCTC GAGGCCGGCC TCGAAATCAT CGCCAAGCCG
CCCGGCAAGA AGCCGCAATC GCTGTCGCTG CTGTCGGGCG GCGAGCAGGC GCTGACCGCG
ATGGCGCTGA TCTTCGCGGT GTTCCTCACC AACCCGTCGC CGATCTGCGT GCTGGACGAA
GTCGACGCGC CGCTCGACGA CCACAACGTC GAACGCTTCT GCGACCTCTT GAACGAGATG
ACCGCGACCA CCGAGACGCG TTTCATCATC ATCACGCATA ATCCGATCAC GATGGCGCGG
ATGAACCGGC TGTTCGGCGT CACCATGGCC GAGCGCGGCG TGTCGCAGCT CGTCTCCGTC
GACCTCGAAG GCGCCGTCGG GATTCTGGAC CAGAACGTGG CATGA
 
Protein sequence
MKLTRLRLHG FKSFVEPTDF MIEPGLTGVV GPNGCGKSNL VEALRWAMGE TSHKSLRAAD 
MDAVIFAGSG NRPSRNHAEV VMSIDNSDRT APAAMNDSEI LEISRRIERE AGSQYRINGR
EVRARDVQLL FADAATGARS PALVHQGKIG EIIQAKPEQR RRVLEDAAGV AGLHARRHEA
ELRLKAAETN LTRVEDVIGQ LSTQVDGLKK QARQAIRFRD VAAKVRKTEA MLYHLRWRDA
QSEVGAAAQV HDLGVRELAE RTREQAEAAR IQADRASELP GLREAEARAA AGLQRLINAR
ELLDREEARA KERVAELERR LTQFSADVER EQRQSIDADA ALERLETEDI ELREEIMERV
EKRSGVDERV GLAEEALGEA ERLFAELTTQ LAQLTARRNQ FEQAVRSHRD RLARLDNDIR
NVEAEVDKLT RETSGAGDVD ELAEAVAMAQ ETLAELESSV QNAEAAHISA RQKLDGSRAP
LTEADKRVQR LETEAKTISK ILNGETKNLW PPIIDGITVA KGYEKAIGAV LGDDLDAPVD
PSAPMRWTDV GVQADDPALP EGVEALSQHV NAPPELKRRL AQIGVVAKER GAELVGQLKT
GQRLVSLDGD VWRWDGFVAS AHAPTGAARR LAERARLVDI ENDLEQARID AAAKREALEM
AEAELRNAAA AETAARESLR GARREVDAAR ERHAAAEREI NRHAARRSAL TEAQSRLAAD
RLEAEMAYET AENALAELAP NDDSEQRLAA VRNDIENHRR NAAQVRAEAQ ALAREAELAD
KRLQAIVAER HEWNKRKQSA ASQIATVEER LAELTAERAE LDNAPAVFAE KRSAVITEIE
YAETDRRAAA DALATAEQAM ADTDRSAKAT LEHLSSAREA CARAEERMEA ARRRLEDVER
EIRDMLEVEP QAAASLAEVQ EGVELPALTE IEDNLEKLRR DRERLGAVNL RAEEELNEVE
TQHGSLAAER DDLVEAIKKL RTGIQSLNKE ARERLLASFE VVNGHFKRLF TTLFGGGEAE
LKLIESDDPL EAGLEIIAKP PGKKPQSLSL LSGGEQALTA MALIFAVFLT NPSPICVLDE
VDAPLDDHNV ERFCDLLNEM TATTETRFII ITHNPITMAR MNRLFGVTMA ERGVSQLVSV
DLEGAVGILD QNVA