| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1177 |
|---|
| Symbol | |
|---|
| ID | 4021653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1334997 |
|---|
| End bp | 1336139 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637961369 |
|---|
| Product | hydrogenase expression/formation protein HypD |
|---|
| Protein accession | YP_568316 |
|---|
| Protein GI | 91975657 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0409] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.162166 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACA TGGATGAGTA TCGCGACGGC AAGATTGCCC GCAGCATCGC CGCGGCGATC
GCGGCGGCGG CCGATCCGGC GCGGCTGTAT CACTTCATGG AGTTCTGCGG CGGCCATACC
CATGCGATCT CGCGCTACGG GCTGGAGGAT CTGCTCCCCG GCAACGTCCG CATGGTGCAC
GGGCCGGGCT GTCCGGTCTG CGTGCTGCCG ATCGGCCGCA TCGACATGGC GATCCGCCTT
GCGCAGCGGC CCGAGGTGAC GCTGTGCACT TATGGCGATC TGATGCGGGT GCCGGGCTCG
CACAGCGCCT CGCTGCTGCG CGCCAAGGCC GCCGGCGCCG ACATCCGCAT GGTGTATTCG
ACGCTCGATG CGATCGCGAT CGCGCAGGCC GAGCCGGAGC GCCAGGTGGT GTTCTTCGCG
ATCGGCTTCG AGACCACCAC GCCGCCGACC GCGCTGGCAA TCAAACTCGC GGTTTTGAAG
CGGCTGACCA ATTTCACCGT GTTCTGCAAC CACGTGCTGA CGCCGCCGGC GATCCGCGGC
ATCCTCGAAC ATCCCGATCT CGACGGAGTG GAAGGGCCGA AGCTCGACGG CTTCATCGGC
CCGGCCCATG TCAGCGCCGT GATCGGCTCG GACGCCTTCG CCGAATTCGC GCGCGACTTC
GAAAAGCCGG TGGTGGTCGC GGGTTTCGAG CCGCTCGACG TGATGCAGGC GATCCTGATG
CTGATCCGGC AGGTCAATGA CGGCCGCCAC GCTGTCGAGA ACCAGTACAT CCGCGCGGTG
TCGCCGCAGG GCAACCGGAT CGCGCAGGCG GAGGTCGCCG AGGTGTTCGA ACTGCGCGAG
AGTTTCGAAT GGCGCGGCTT CGGCGCGGTG CCGGCGAGCG GGCTGCGGCT GCGCGAGGCC
TATGCGGGGT TCGACGCCGA GCGTCGCTTC GCAATGCCGG AAATCTCCGC CGCCGACAAT
CCGGCGTGCG AATGCGGCGC CATCCTGCGC GGCATCAAGC GGCCGACCGA TTGCAAGCTG
TTCGGCACGC TGTGCACGCC GGAGACGCCG ATGGGCTCGT GCATGGTGTC ATCGGAAGGC
GCCTGCGCGG CGCACTGGAC CTATGGCCGT TTCCGCGACC ATGCGCGGAG GGCGGTGGCA
TGA
|
|---|
| Protein sequence | MKYMDEYRDG KIARSIAAAI AAAADPARLY HFMEFCGGHT HAISRYGLED LLPGNVRMVH
GPGCPVCVLP IGRIDMAIRL AQRPEVTLCT YGDLMRVPGS HSASLLRAKA AGADIRMVYS
TLDAIAIAQA EPERQVVFFA IGFETTTPPT ALAIKLAVLK RLTNFTVFCN HVLTPPAIRG
ILEHPDLDGV EGPKLDGFIG PAHVSAVIGS DAFAEFARDF EKPVVVAGFE PLDVMQAILM
LIRQVNDGRH AVENQYIRAV SPQGNRIAQA EVAEVFELRE SFEWRGFGAV PASGLRLREA
YAGFDAERRF AMPEISAADN PACECGAILR GIKRPTDCKL FGTLCTPETP MGSCMVSSEG
ACAAHWTYGR FRDHARRAVA
|
|---|
| |